View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_high_9 (Length: 478)
Name: NF15999_high_9
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 41042512 - 41042057
Alignment:
| Q |
16 |
gaagcatcacaaaaactggcaccttctttgaattatcatggttactatgaacaattgatggagcatgcacctgctcccatttttcatcagacttgaaggt |
115 |
Q |
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| T |
41042512 |
gaagcatcacaaaaactggtaccttctttgaattatcatggttactatgaacaattgatggagcatgcacctgctcccatttttcatcagacttgaaggt |
41042413 |
T |
|
| Q |
116 |
gtgtgctatttgcatagaactcttggctttgagacggaaagatggtttaatctttgcaaaggtgagagtggaagagacatcatcaaaggttttaaggaac |
215 |
Q |
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| T |
41042412 |
gtgtgctatttgcatagaactcttggctttgagacggaaagatggtttaatctttgcaaaggtgagagtggaagagacatcatcaaaggttttaaggaac |
41042313 |
T |
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| Q |
216 |
ttggtttctttctgaatgatgaaagaaattgaagaacgaagtgttaaagtcattgtgtannnnnnngaaaatagatgaatgatatg----atatgttgaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |
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| T |
41042312 |
ttggtttctttctgaatgatgaaagaaattgaagaacgaagtgttaaagtcattgtgtatttttttgaaaatagatgaatgatatgttgaaaatgttgaa |
41042213 |
T |
|
| Q |
312 |
aatgtaatgtttatttataagaatagaaaataaggtttgggatctgaagtggacaacgttggtgggctctgattggaaagtggaaaaagtgcaagaaatc |
411 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41042212 |
gatgtaatgtttatttataagaataaaaaataaggtttgggatctgaagtggacaacgttggtgggctctgattggaaagtggaaaaagtgcaagaaatc |
41042113 |
T |
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| Q |
412 |
aaaactggtctgttctgtctgtcatatgcttacgtgtttccacctcttctattctt |
467 |
Q |
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| T |
41042112 |
aaaactggtctgttctgtctgtcatatgcttacgtgtttccacctattctattctt |
41042057 |
T |
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