View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_12 (Length: 452)
Name: NF15999_low_12
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Complemental strand, 40311059 - 40310631
Alignment:
| Q |
13 |
agtttcttgattactgagagagagttcttgatgattatgaaaaagatgagaaggaggaagagaagtgtttatattggtgaagtatgtagagtcaacaaga |
112 |
Q |
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| T |
40311059 |
agtttcttgattactgagagagagttcttgatgattatgaaaaagatgagaaggaggaagagaagtgtttatattggtgaagtatgtagagtcaacaaga |
40310960 |
T |
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| Q |
113 |
aagggttgttggtattggtatgaaaaagctgccatatgagttatcaagatatgagaggactcttgaaaatgatagaaggaaaggaaaacactggtttctg |
212 |
Q |
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| T |
40310959 |
aagggttgttggtattggtatgaaaaagctgccatatgagttatcaagatatgagaggactcttgaaaatgatagaaggaaaggaaaacactggtttctg |
40310860 |
T |
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| Q |
213 |
ttgctggtgttggtgatgatgatactcactcaaaagcagaagcaggtatcagtgttggactcagtcagtagcaaaagttggtctgtcacataaactcaga |
312 |
Q |
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| T |
40310859 |
ttgctggtgttggtgatgatgatactcactcaaaagcagaagcaggtatcagtgttggact----cagtagcaaaagttggtctgtcacataaactcaga |
40310764 |
T |
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| Q |
313 |
ggacagacctatatataaacatattgtggcatatacaaataaaatagctgaaatctttaaccattaactcaattcccatgcagagagaccagtacatgta |
412 |
Q |
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| T |
40310763 |
ggacagacctatatataaacatattgtggcatatacaaataaaatagctgaaatctttaaccattaactcaattcccatgcagagagaccagtacatgta |
40310664 |
T |
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| Q |
413 |
tatttgaccggtctaatctcatcaacccctatg |
445 |
Q |
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| T |
40310663 |
tatttgaccggtctaatctcatcaacctctatg |
40310631 |
T |
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