View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_13 (Length: 400)
Name: NF15999_low_13
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 41753649 - 41754035
Alignment:
| Q |
12 |
cagagagaaaaagtaagccatcatcaatttacaattacatttttaacgaatcacaatcaatcatatgctcaactttactacaaaaattacgagacaatag |
111 |
Q |
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| T |
41753649 |
cagagagaaaaagtaagccatcatcaatttacaattacatttttaacaaatcacaatcaatcgtatgctcaactttactacaaaaattacgagacaatag |
41753748 |
T |
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| Q |
112 |
tagtcagatcattaaattttatttattatttcaactttttctacnnnnnnnnnnnnc-acacaccatgcttataagaagaaaaaatgttcaaaagaacat |
210 |
Q |
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| T |
41753749 |
t---cagatcattaaatttttgttattatttcaactttttctatatatatatatatatatataccatgcttataagaagaaaaaaggttcaaaagaacgt |
41753845 |
T |
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| Q |
211 |
accatcgcgctttttctgcaaagttttaattatagagaggaaagcgttgtagaggtctaatgtcacgtaaaccggttttccaacttgttggttaagttgt |
310 |
Q |
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| T |
41753846 |
accatcgcgctttttctgcaaagttttaattatagagaggaaagcgttatagaggtctaatgtcacgtaaaccggttttccaacctgttggttaagttgt |
41753945 |
T |
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| Q |
311 |
agcacagtttggagtagtaatttgttgtgattttctgagaccaaattcaaaaggtcgacgcaactaagatgaaaagttacagcgtttatc |
400 |
Q |
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| T |
41753946 |
agtacagtttggagtagtaatttgttgtgattttctgagaccaaattcaaaaggtcgacgcaactaagatgaaaagttacagcgtttatc |
41754035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 190 - 390
Target Start/End: Original strand, 41758077 - 41758280
Alignment:
| Q |
190 |
aaaaaatgttcaaaagaacataccatcgcgctttttctgcaaagttttaattatagagaggaaagcgttgtagaggtctaatgtcacgtaaaccggtttt |
289 |
Q |
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| T |
41758077 |
aaaaaaagatcaaaaggacataccatcatgctttttctgcatagttttaattgtagagaggaaagcattgtagaggtctagtgtcacataaactgatttt |
41758176 |
T |
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| Q |
290 |
ccaacttgt---tggttaagttgtagcacagtttggagtagtaatttgttgtgattttctgagaccaaattcaaaaggtcgacgcaactaagatgaaaag |
386 |
Q |
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| T |
41758177 |
ccaacttgttgttggttaagttgtagcacagtttggagtagtaatttgttgtgatcttctgagaccaaattcaaaaggtcaacgcaactaagatggaaag |
41758276 |
T |
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| Q |
387 |
ttac |
390 |
Q |
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|||| |
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| T |
41758277 |
ttac |
41758280 |
T |
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