View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_15 (Length: 390)
Name: NF15999_low_15
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 33116294 - 33116098
Alignment:
| Q |
17 |
aaggaggatgatagaatcaaatttattttcacaagcatcctctagaaaatagggctgccctagatatttagactcacacattgcacacttgcagttgcac |
116 |
Q |
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| T |
33116294 |
aaggaggatgatagaatcaaatttattttcacaagcatcctctaaaaaatagggctgccctagatatttagactcacacattgcacact------tgcac |
33116201 |
T |
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| Q |
117 |
gtatgtaatgagtggaagtggtgaatgtcaaagattgctgttggttgcaacttcgaaagaagtgccatgcatgggataaagtcaagtcaatatgatttgt |
216 |
Q |
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| T |
33116200 |
gtatgtaatgagtggaagtggtgaatgtcaaagat---tgttggttgcaacttagaaagaagtgc----catgggataaagtcaagtcaatatgatttgt |
33116108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 33115867 - 33115806
Alignment:
| Q |
320 |
cacagaaaattatgataaatcagaagtactaatttagtccatatttagtattgcagtataat |
381 |
Q |
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| T |
33115867 |
cacagaaaactatgataaatcagaagtattaatttagtccatatttagtattgcagtataat |
33115806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 33116033 - 33115984
Alignment:
| Q |
260 |
gataacttttggaataactattgataagaaaatcaaaacaatagagagaa |
309 |
Q |
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| T |
33116033 |
gataacttttggaataaatattaataagaaaatcaaaacaatggagagaa |
33115984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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