View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15999_low_17 (Length: 389)
Name: NF15999_low_17
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 21181695 - 21181345
Alignment:
| Q |
22 |
atagatgatattatcgacatagacttgaacaatcaacaaatgagattcactagattttctgaaatgtgatgtttcaatttatcatcttgaaaaacatttt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21181695 |
atagatgatattatcgacatagacttgaacgatcaacaaatgagattcactagattttctgaaaagtgatgtttcaatttgtcatcttgaaaaacatttt |
21181596 |
T |
|
| Q |
122 |
ctttcaaaaaggaactcaatatctctcatatcaagcccttggtgcttgtttgagaccatatagagccttagtgagtttgaaaacatgatcattaggtttt |
221 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
21181595 |
ctttcaaaaaggaactca--atctctcatatcaagcccttggtgcttgtttgagaccatatagaaccttagtgagtttgaaaatatg---attaggtttt |
21181501 |
T |
|
| Q |
222 |
tcgttgttgatgaaaccaggagtttgatgaacatagtctttctcgtttagaaaaggagtttgatgaacatgattaggtttttatatccatttgaaaaggt |
321 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||| | || | || || | |||||||||||||||||||| || |
|
|
| T |
21181500 |
ttgttgttgatgaaaccaggagtttgatgaacatggtctttctcgtttagaaatcca--ttaaaaaaaatacat---tttttatatccatttgaaaaagt |
21181406 |
T |
|
| Q |
322 |
ttaatgcaaattgttctttatgtatctcatattggtaaccagactaatttgtttcttctca |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21181405 |
ttaatgcaaattgttctttatgtatctcatattggtaaccagactaatttgtttcttctca |
21181345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 17433898 - 17433804
Alignment:
| Q |
159 |
cttggtgcttgtttgagaccatatagagccttagtgagtttgaaaacatgatcattaggtttttcgttgttgatgaaaccaggagtttgatgaacata |
256 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| |||| |||||||||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
17433898 |
cttggtgcttgtttgagaccatatagagattttaagagtttgaaagcatggc---taggtttttccttgttgatgaaactaagagtttgatgaacata |
17433804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 17156400 - 17156355
Alignment:
| Q |
165 |
gcttgtttgagaccatatagagccttagtgagtttgaaaacatgat |
210 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
17156400 |
gcttgtttgagaccatatagtgctttagtgagtttaaaaacatgat |
17156355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University