View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15999_low_19 (Length: 375)

Name: NF15999_low_19
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15999_low_19
NF15999_low_19
[»] chr4 (23 HSPs)
chr4 (1-358)||(7053327-7053698)
chr4 (5-130)||(15449911-15450036)
chr4 (44-136)||(42872161-42872252)
chr4 (5-136)||(52240032-52240164)
chr4 (8-114)||(49896437-49896543)
chr4 (6-125)||(28590746-28590865)
chr4 (43-136)||(31968249-31968346)
chr4 (13-125)||(23317143-23317255)
chr4 (13-125)||(25922219-25922331)
chr4 (5-108)||(44498615-44498718)
chr4 (13-125)||(22161596-22161708)
chr4 (47-125)||(50997299-50997377)
chr4 (5-132)||(56085501-56085627)
chr4 (5-80)||(27850823-27850899)
chr4 (6-74)||(52138686-52138754)
chr4 (2-89)||(19750172-19750259)
chr4 (2-89)||(19789547-19789634)
chr4 (1-67)||(2312380-2312446)
chr4 (5-35)||(7707744-7707774)
chr4 (1-35)||(56157428-56157462)
chr4 (43-132)||(13533097-13533186)
chr4 (13-66)||(26496210-26496263)
chr4 (5-66)||(26629944-26630005)
[»] chr1 (15 HSPs)
chr1 (140-358)||(5355680-5355912)
chr1 (1-130)||(6049262-6049391)
chr1 (3-125)||(12665942-12666064)
chr1 (5-119)||(9226063-9226177)
chr1 (47-125)||(8027428-8027506)
chr1 (43-133)||(44278214-44278303)
chr1 (13-137)||(14478428-14478552)
chr1 (1-35)||(15746698-15746732)
chr1 (43-136)||(51299472-51299565)
chr1 (9-66)||(46318519-46318576)
chr1 (1-69)||(28050471-28050539)
chr1 (6-35)||(16965057-16965086)
chr1 (13-67)||(51445752-51445806)
chr1 (43-91)||(6242513-6242561)
chr1 (5-78)||(26802094-26802167)
[»] chr8 (20 HSPs)
chr8 (6-136)||(4810621-4810750)
chr8 (5-130)||(45281026-45281150)
chr8 (43-136)||(26696694-26696786)
chr8 (43-108)||(34504533-34504598)
chr8 (13-125)||(37400942-37401054)
chr8 (11-125)||(14030478-14030592)
chr8 (6-108)||(20180533-20180635)
chr8 (47-125)||(1659147-1659225)
chr8 (47-125)||(36803117-36803195)
chr8 (5-99)||(24192531-24192625)
chr8 (13-125)||(416413-416525)
chr8 (13-125)||(6337094-6337206)
chr8 (5-64)||(32798434-32798493)
chr8 (1-66)||(32695174-32695239)
chr8 (61-136)||(41742273-41742348)
chr8 (5-87)||(10669325-10669407)
chr8 (6-75)||(9854772-9854840)
chr8 (1-108)||(17455197-17455303)
chr8 (5-34)||(43202250-43202279)
chr8 (5-66)||(31845696-31845757)
[»] chr7 (19 HSPs)
chr7 (5-136)||(40811475-40811606)
chr7 (3-125)||(669231-669353)
chr7 (43-136)||(45454201-45454293)
chr7 (5-108)||(46201285-46201388)
chr7 (58-130)||(41078931-41079003)
chr7 (6-108)||(44372884-44372986)
chr7 (6-108)||(44381740-44381842)
chr7 (13-125)||(5095228-5095340)
chr7 (13-125)||(24051365-24051477)
chr7 (47-125)||(39752344-39752422)
chr7 (13-137)||(41328381-41328504)
chr7 (5-75)||(2414899-2414969)
chr7 (5-61)||(35295853-35295909)
chr7 (43-124)||(28325261-28325343)
chr7 (6-64)||(43460725-43460783)
chr7 (5-65)||(32255145-32255205)
chr7 (5-35)||(13564170-13564200)
chr7 (43-136)||(9662069-9662162)
chr7 (5-67)||(22537714-22537776)
[»] chr2 (15 HSPs)
chr2 (5-136)||(6030301-6030431)
chr2 (43-125)||(30749166-30749249)
chr2 (5-125)||(30748633-30748753)
chr2 (5-89)||(42641738-42641822)
chr2 (13-125)||(2384330-2384442)
chr2 (13-125)||(40323095-40323207)
chr2 (47-125)||(36215013-36215091)
chr2 (9-64)||(35903665-35903720)
chr2 (4-67)||(18616904-18616967)
chr2 (1-35)||(29219537-29219571)
chr2 (1-35)||(29332836-29332870)
chr2 (5-104)||(34513416-34513515)
chr2 (5-99)||(8320911-8321005)
chr2 (6-35)||(43034402-43034431)
chr2 (13-125)||(4920902-4921012)
[»] chr5 (12 HSPs)
chr5 (5-136)||(27705147-27705277)
chr5 (13-125)||(31171014-31171126)
chr5 (47-125)||(27262614-27262692)
chr5 (13-108)||(28393375-28393470)
chr5 (1-76)||(30859061-30859136)
chr5 (47-125)||(41874175-41874253)
chr5 (5-66)||(1102772-1102833)
chr5 (5-66)||(11262547-11262608)
chr5 (5-35)||(1009339-1009369)
chr5 (43-124)||(5976923-5977005)
chr5 (5-35)||(30910897-30910927)
chr5 (5-66)||(22047888-22047949)
[»] chr3 (15 HSPs)
chr3 (4-108)||(28909466-28909570)
chr3 (54-137)||(36176367-36176449)
chr3 (13-125)||(44175728-44175840)
chr3 (47-125)||(3807834-3807912)
chr3 (47-101)||(12107845-12107899)
chr3 (47-108)||(37981533-37981594)
chr3 (5-108)||(26886427-26886529)
chr3 (13-108)||(33705349-33705444)
chr3 (13-103)||(44182426-44182516)
chr3 (5-72)||(10301088-10301155)
chr3 (5-35)||(10338892-10338922)
chr3 (43-105)||(18458555-18458617)
chr3 (5-35)||(35371062-35371092)
chr3 (5-59)||(3208639-3208693)
chr3 (5-34)||(34819217-34819246)
[»] scaffold0013 (1 HSPs)
scaffold0013 (43-108)||(32764-32831)
[»] scaffold0035 (1 HSPs)
scaffold0035 (13-125)||(83063-83175)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-67)||(43473-43539)
[»] chr6 (7 HSPs)
chr6 (47-125)||(13847764-13847842)
chr6 (5-65)||(7311626-7311686)
chr6 (13-137)||(11722948-11723072)
chr6 (6-35)||(17837772-17837801)
chr6 (5-66)||(18346650-18346711)
chr6 (5-66)||(23392369-23392430)
chr6 (5-66)||(29381630-29381691)
[»] scaffold0011 (1 HSPs)
scaffold0011 (5-66)||(127587-127648)
[»] scaffold2071 (1 HSPs)
scaffold2071 (5-75)||(573-643)
[»] scaffold0077 (1 HSPs)
scaffold0077 (5-67)||(54083-54145)
[»] scaffold0219 (1 HSPs)
scaffold0219 (43-99)||(8059-8115)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 7053327 - 7053698
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctac 100  Q
    |||||||||||||| ||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7053327 caatcttaagagtgatccaccatagatcctattaatttttttaatttaaatcgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctac 7053426  T
Q  101 tgtatctttcagtgagtcaacaacacttaattttttcagatatgataaatagacac-aaaaactggacacataaacgacaccatgtgtg-----tattgt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| ||||     ||||||    
T  7053427 tgtatctttcagtgagtcaacaacacttaattttttcagatatgataaatagacacaaaaaactagacacatatacgacaccatatgtgtattctattgt 7053526  T
Q  195 tgc----------tatttattttaattccttttcttctcttccttgcaccaccatctacctctttacaaaacccgnnnnnnncttcttcttcctgtcatt 284  Q
    |||          ||||||||||||||||||||||||||||||||||||||||  || ||||| |||||||||||        |||||||||||||||||    
T  7053527 tgcttaataaatttatttattttaattccttttcttctcttccttgcaccacc--ctccctctgtacaaaacccgttttttttttcttcttcctgtcatt 7053624  T
Q  285 catgctctaactgcaacaacaacaccacaaccgtcaccttctagtttctcactccggtggtcttccttcgtctc 358  Q
    ||||||| |||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||| ||||    
T  7053625 catgctccaactgcaacaacaacaccacaactttcaccttctcgtttctcactccggtggtcttccttcctctc 7053698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 15450036 - 15449911
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    |||||||||||||||||||||||||||||||       ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  15450036 cttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttgctcttttttattaaaagatgatcgttagatcatgcatgtctagtgta 15449937  T
Q  105 tctttcagtgagtcaacaacacttaa 130  Q
    |||| | ||||||||||| |||||||    
T  15449936 tcttccggtgagtcaacatcacttaa 15449911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 42872252 - 42872161
Alignment:
Q  44 atttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaatttttt 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  42872252 atttaaaccgtttgatcttttttattaaaagaggatcgttagattatgcatatctactgtatc-ttcagtgagtcaacaacacttgatttttt 42872161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 52240032 - 52240164
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt-attaaaagaggatcgttagatcatgcatgtctactgt 103  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||| |||||| |||||||||    ||||| ||||||||||||||| ||    
T  52240032 cttaagagtggtccaccatagatcctattaatatttttaatttaaaccgtttgatttttttttattaaaagatagccgttatatcatgcatgtctaccgt 52240131  T
Q  104 atctttcagtgagtcaacaacacttaatttttt 136  Q
    ||||| ||||||| |||||| |||||| |||||    
T  52240132 atcttccagtgagccaacaatacttaacttttt 52240164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 49896543 - 49896437
Alignment:
Q  8 aagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatct 107  Q
    |||||||||||||  |||||||| ||||       ||||||||||||||||| |||||||||||||||| | | |||||||||||||||||| |||||||    
T  49896543 aagagtggtccactgtagatcctgttaattattttaatttaaaccgtttgatattttttattaaaagagaaccattagatcatgcatgtctattgtatct 49896444  T
Q  108 ttcagtg 114  Q
    | |||||    
T  49896443 tacagtg 49896437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 28590865 - 28590746
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtat 105  Q
    ||||||||| | || |||||||||||||||       ||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||| | ||    
T  28590865 ttaagagtgattcatcatagatcctattaattattttaatataaactgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctaccggat 28590766  T
Q  106 ctttcagtgagtcaacaaca 125  Q
    ||| | |||| |||| ||||    
T  28590765 cttacggtgaatcaaaaaca 28590746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 31968346 - 31968249
Alignment:
Q  43 aatttaaaccgtttgatctttttt-attaaaagaggatcgttagat----catgcatgtctactgtatctttcagtgagtcaacaacacttaatttttt 136  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||    ||||||||||||||||||  ||| ||||||||||||||||| |||||||    
T  31968346 aatttaaaccgtttgatttttttttattaaaagagggtcgttagattatgcatgcatgtctactgtat-attccgtgagtcaacaacacttgatttttt 31968249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 23317255 - 23317143
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | |    
T  23317255 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 23317156  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  23317155 tgaaccaacaaca 23317143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 25922331 - 25922219
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | |    
T  25922331 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 25922232  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  25922231 tgaaccaacaaca 25922219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 44498615 - 44498718
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    |||||||||||||||||||||||||||||||       |||| |||||||||||| |||||| |||||||| || | |||||| | ||||||||| | ||    
T  44498615 cttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgattttttttcttaaaagatgaccattagattacgcatgtctatttta 44498714  T
Q  105 tctt 108  Q
    ||||    
T  44498715 tctt 44498718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 22161708 - 22161596
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  | ||| ||||||||||||||||| |||||||||| | |    
T  22161708 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaagattgttagatcatgcatgtccactgtatcttactg 22161609  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  22161608 tgaaccaacaaca 22161596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 50997377 - 50997299
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    |||| |||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | ||||  ||||||||    
T  50997377 taaatcgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaaca 50997299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 56085501 - 56085627
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||| |||||| | ||| || || |||| |||||  ||||| || | ||    
T  56085501 cttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat-ttttttttaaaaggatgaccgttggatcacacatgtgtatttta 56085599  T
Q  105 tctttcagtgagtcaacaacacttaatt 132  Q
    |||| ||||||  || ||||||||||||    
T  56085600 tcttacagtgaaccatcaacacttaatt 56085627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 27850899 - 27850823
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttga-tcttttttattaaaagaggatc 80  Q
    ||||| |||||||||||||||||||||||||       |||||||||||||||| |||||||| ||||| |||||||    
T  27850899 cttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttgattctttttttttaaaggaggatc 27850823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 52138754 - 52138686
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaag 74  Q
    |||||| |||||||||||||||||||||||       ||||||||||||||||| |||||| |||||||    
T  52138754 ttaagaatggtccaccatagatcctattaattattctaatttaaaccgtttgatttttttttttaaaag 52138686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 19750259 - 19750172
Alignment:
Q  2 aatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatca 89  Q
    |||||||| ||| |||||||||||||||||||||       |||||||| ||||||||||||||| | ||| |||||| ||| |||||    
T  19750259 aatcttaaaagttgtccaccatagatcctattaattattttaatttaaatcgtttgatcttttttttaaaaggaggattgttggatca 19750172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 19789547 - 19789634
Alignment:
Q  2 aatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatca 89  Q
    |||||||| ||| |||||||||||||||||||||       |||||||| ||||||||||||||| | ||| |||||| ||| |||||    
T  19789547 aatcttaaaagttgtccaccatagatcctattaattattttaatttaaatcgtttgatcttttttttaaaaggaggattgttggatca 19789634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2312446 - 2312380
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttta 67  Q
    ||||||||| |||||||||||||||||||||||||       ||||||||| ||||||| |||||||    
T  2312446 caatcttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgatttttttta 2312380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 7707744 - 7707774
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaa 35  Q
    |||||||||||||||||||||||||||||||    
T  7707744 cttaagagtggtccaccatagatcctattaa 7707774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 56157462 - 56157428
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaa 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  56157462 caatcttaagagtgttccaccatagatcctattaa 56157428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 13533186 - 13533097
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaatt 132  Q
    ||||| |||| |||||||||||||    | |||||| |||| ||||||||| ||||| ||||||||  ||||| ||| ||||||||||||    
T  13533186 aattttaaccatttgatctttttttaagagagaggaccgttggatcatgcaagtctattgtatcttcaagtgaatcatcaacacttaatt 13533097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 26496263 - 26496210
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    |||||||||||||||||||||||       ||||||||||||||||| ||||||    
T  26496263 tggtccaccatagatcctattaattattctaatttaaaccgtttgatatttttt 26496210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 26629944 - 26630005
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    ||||||||||||||||||||| |||||||||       ||| ||||| ||||||||||||||    
T  26629944 cttaagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatctttttt 26630005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 140 - 358
Target Start/End: Complemental strand, 5355912 - 5355680
Alignment:
Q  140 atatgataaatagacacaaaaa-ctggacacataaacgacaccatgtgtgtatt-----gttgct----------atttattttaattccttttcttctc 223  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||     ||||||          |||||||||||||||||||||||||    
T  5355912 atatgataaatagacacaaaaaactggacacatatacgacaccatatgtgtattctattgttgcttaatacatttatttattttaattccttttcttctc 5355813  T
Q  224 ttccttgcaccaccatctacctctttacaaaacccgnnnnnnncttcttcttcctgtcattcatgctctaactgcaacaacaacaccacaaccgtcacct 323  Q
    |||||||||||||||||| ||||| ||||| || |         |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  5355812 ttccttgcaccaccatctccctctgtacaagacacttttttt--ttcttcttcctgtcattcatgctccaactgcaacaataacaccacaaccgtcacct 5355715  T
Q  324 tctagtttctcactccggtggtcttccttcgtctc 358  Q
    ||| ||||||||||||| |||||||||||||||||    
T  5355714 tctggtttctcactccgatggtcttccttcgtctc 5355680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 6049391 - 6049262
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctac 100  Q
    |||||| || ||||||||||| |||||||| ||||       ||||||||||| ||||| |||||||||||||||||| | |||||||||||||||||||    
T  6049391 caatctaaatagtggtccaccgtagatcctgttaattattttaatttaaaccgattgatattttttattaaaagaggaccattagatcatgcatgtctac 6049292  T
Q  101 tgtatctttcagtgagtcaacaacacttaa 130  Q
    |||||||| || |||  |||||||| ||||    
T  6049291 tgtatcttacaatgaaccaacaacaattaa 6049262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 12665942 - 12666064
Alignment:
Q  3 atcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactg 102  Q
    |||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||| |||||||  |  ||||||||||| |||| || ||    
T  12665942 atcttaagagtggtccaccatagatcttattaattttgttaatttaaaccgtttgatcttttttaataaaagataaatgttagatcatgtatgtttattg 12666041  T
Q  103 tatctttcagtgagtcaacaaca 125  Q
    |||||| || ||| |||||||||    
T  12666042 tatcttacaatgaatcaacaaca 12666064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 9226177 - 9226063
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    ||||| |||||||||||||||||||||||||       ||||||||  |||||||||||||||||||||||| | | ||| |||| ||||||||| | ||    
T  9226177 cttaaaagtggtccaccatagatcctattaattattttaatttaaattgtttgatcttttttattaaaagagaaccattaaatcacgcatgtctatttta 9226078  T
Q  105 tctttcagtgagtca 119  Q
    |||| | ||||||||    
T  9226077 tcttacggtgagtca 9226063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 8027428 - 8027506
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | ||||  ||||||||    
T  8027428 taaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaaca 8027506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 44278303 - 44278214
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaattt 133  Q
    |||||||||  |||||||||||||||||||| | ||||||||||| ||||||||||||| || | ||| || ||||||||||| |||||||    
T  44278303 aatttaaactatttgatcttttttattaaaacatgatcgttagattatgcatgtctactcta-ccttccgtaagtcaacaacatttaattt 44278214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 14478428 - 14478552
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||||||||||||||||||       ||||||||||||||||| |||||| | ||| |||| || ||  || | ||| || || | |||||| | |    
T  14478428 tggtccaccatagatcctattaattattctaatttaaaccgtttgattttttttttaaaaggagggtcattgaattacgcaggtgtattttatcttacgg 14478527  T
Q  113 tgagtcaacaacacttaattttttc 137  Q
    |||||||||||||||||||| ||||    
T  14478528 tgagtcaacaacacttaattatttc 14478552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15746732 - 15746698
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  15746732 caatcttaagagtggtccaccatagatcctattaa 15746698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 51299472 - 51299565
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaatttttt 136  Q
    |||||||||| ||||||||||| | | ||| ||| ||| || ||||||||  ||||| |||||||| |||||| ||| |||||||||| |||||    
T  51299472 aatttaaaccctttgatcttttatttaaaatgagaatcattggatcatgctggtctattgtatcttacagtgaatcaccaacacttaaattttt 51299565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 46318576 - 46318519
Alignment:
Q  9 agagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    |||||||||||||||||||||||||||       |||||||| |||||||||||||||    
T  46318576 agagtggtccaccatagatcctattaaatattttaatttaaatcgtttgatctttttt 46318519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28050471 - 28050539
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttatt 69  Q
    |||||||||||||| |||||||||||||||||| |       || || |||||||||||||||||||||    
T  28050471 caatcttaagagtgttccaccatagatcctattgattttcttaactttaaccgtttgatcttttttatt 28050539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 16965086 - 16965057
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaa 35  Q
    ||||||||||||||||||||||||||||||    
T  16965086 ttaagagtggtccaccatagatcctattaa 16965057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 51445752 - 51445806
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttta 67  Q
    |||||||||||||||||||||||       ||||||||||||||||| |||||||    
T  51445752 tggtccaccatagatcctattaattattctaatttaaaccgtttgatttttttta 51445806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 6242561 - 6242513
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatg 91  Q
    ||||| |||| ||||||||||||| |||||||||| ||||| |||||||    
T  6242561 aattttaaccatttgatcttttttcttaaaagagggtcgttggatcatg 6242513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 26802094 - 26802167
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagagga 78  Q
    ||||||||| |||||| ||||||| ||||||       |||||||||||||||||  ||||| |||||||||||    
T  26802094 cttaagagttgtccactatagatcatattaatcattttaatttaaaccgtttgattattttttttaaaagagga 26802167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 4810621 - 4810750
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtat 105  Q
    ||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  4810621 ttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttgatcttttttattaaaagaggatcgttagatcatacatatctattgtat 4810720  T
Q  106 ctttcagtgagtcaacaacacttaatttttt 136  Q
    | |||  ||||||||||||||||||||||||    
T  4810721 c-ttccttgagtcaacaacacttaatttttt 4810750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 45281150 - 45281026
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    ||||||||||||| |||||| ||||||||||       ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  45281150 cttaagagtggtctaccataaatcctattaatatttttaatttaaaccgtttgatcttttttattaaaagatgaacgttagatcatgcatgtctactgta 45281051  T
Q  105 tctttcagtgagtcaacaacacttaa 130  Q
    |||| || ||||||||||||||||||    
T  45281050 tcttcca-tgagtcaacaacacttaa 45281026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 26696694 - 26696786
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaatttttt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  26696694 aatttaaaccgtttgatcttttttattaaaagaggatcgttagattatgcatgtctactgtatc-ttccgtgagtcaacaacgcttaatttttt 26696786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 34504598 - 34504533
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctt 108  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34504598 aatttaaactctttgatcttttttattaaaagaggatcgttagatcatgcatgtctactatatctt 34504533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 37400942 - 37401054
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||||||||||||||||||       ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||  |||||||||| | |    
T  37400942 tggtccaccatagatcctattaatttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgttcactgtatcttactg 37401041  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  37401042 tgaaccaacaaca 37401054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 14030478 - 14030592
Alignment:
Q  11 agtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttc 110  Q
    |||||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| |    
T  14030478 agtggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttac 14030577  T
Q  111 agtgagtcaacaaca 125  Q
     ||||  ||||||||    
T  14030578 tgtgaaccaacaaca 14030592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 20180635 - 20180533
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtat 105  Q
    ||||||||||||||||||||||||||||||       |||| ||||||||||||||||||| ||||||||||| | |||||| |  |||||||| | |||    
T  20180635 ttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatcttttttcttaaaagaggaccattagattacacatgtctattttat 20180536  T
Q  106 ctt 108  Q
    |||    
T  20180535 ctt 20180533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 1659225 - 1659147
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | ||||  ||||||||    
T  1659225 taaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaaca 1659147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 36803195 - 36803117
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | ||||  ||||||||    
T  36803195 taaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaaca 36803117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 24192625 - 24192531
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtcta 99  Q
    |||||||||||||||||||||||||||||||       |||| |||||||||||| |||||| ||||||||| | | |||||| | |||||||||    
T  24192625 cttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgattttttttcttaaaagagaaccattagattacgcatgtcta 24192531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 416525 - 416413
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  | ||| ||||||||||||||||| |||||||||| | |    
T  416525 tggtccactatagatcctattattatttttaatataaaccgtttgatcttttttaataaagaatgattgttagatcatgcatgtccactgtatcttactg 416426  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  416425 tgaaccaacaaca 416413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 6337206 - 6337094
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  | ||| ||||||||||||||||| |||||||||| | |    
T  6337206 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaagattgttagatcatgcatgtccactgtatcttactg 6337107  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  6337106 tgaaccaacaaca 6337094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 32798493 - 32798434
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttt 64  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  32798493 cttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatctttt 32798434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32695239 - 32695174
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    ||||||||||| |||||||||||||||||||||||       ||||||||||||||||| ||||||    
T  32695239 caatcttaagattggtccaccatagatcctattaattattttaatttaaaccgtttgatttttttt 32695174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 41742273 - 41742348
Alignment:
Q  61 ttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaatttttt 136  Q
    |||||| |||| |||||| |||| ||||||||| ||||| |||||||| || ||| ||| ||||||||||||||||    
T  41742273 tttttttttaagagaggaccgtttgatcatgcaagtctattgtatcttccaatgaatcatcaacacttaatttttt 41742348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 10669407 - 10669325
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagat 87  Q
    |||||||||||||||||||||||||||||||       ||||||||||| |||||   |||| |||||||||||  |||||||    
T  10669407 cttaagagtggtccaccatagatcctattaaatattttaatttaaaccgattgataaatttttttaaaagaggacggttagat 10669325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 9854840 - 9854772
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaaga 75  Q
    ||||||||||||||||||||||||||||||       |||||||||| |||||| |||||| ||||||||    
T  9854840 ttaagagtggtccaccatagatcctattaattcttctaatttaaaccatttgat-tttttttttaaaaga 9854772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17455197 - 17455303
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctac 100  Q
    ||||||||| |||||||||||||||||| ||||||       ||||| |||||||| |||| |||| ||||||||||| | |||||| | ||| |||||     
T  17455197 caatcttaaaagtggtccaccatagatcttattaattattttaatttgaaccgttttatctatttt-ttaaaagaggaccattagattacgcaggtctat 17455295  T
Q  101 tgtatctt 108  Q
    | ||||||    
T  17455296 tttatctt 17455303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 43202250 - 43202279
Alignment:
Q  5 cttaagagtggtccaccatagatcctatta 34  Q
    ||||||||||||||||||||||||||||||    
T  43202250 cttaagagtggtccaccatagatcctatta 43202279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 31845757 - 31845696
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    ||||||||||||||||||||| |||||||||       ||| ||||| ||||||||||||||    
T  31845757 cttaagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatctttttt 31845696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 40811475 - 40811606
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    ||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||  || ||||||||||| ||||||| ||||    
T  40811475 cttaagagtggtccaccatagattctattaatatttttaatttaaaccgtttgatcttttttattaaaagataattgttagatcatgaatgtctattgta 40811574  T
Q  105 tctttcagtgagtcaacaacacttaatttttt 136  Q
    |||| | ||||||||||||||||||| |||||    
T  40811575 tcttcctgtgagtcaacaacacttaacttttt 40811606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 669353 - 669231
Alignment:
Q  3 atcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactg 102  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||  |  |||||||||||||||| || ||    
T  669353 atcttaagagtggtccaccatagatcctattaattttgttaatttaaaccgtttgatcttttttaataaaagataactgttagatcatgcatgtttattg 669254  T
Q  103 tatctttcagtgagtcaacaaca 125  Q
    |||||| || ||| |||||||||    
T  669253 tatcttacaatgaatcaacaaca 669231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 45454201 - 45454293
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaatttttt 136  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||| |||||||    
T  45454201 aatttaagccgtttgatctttttaattaaaagaggatcgttagattatgcatatctactgtatcttcca-tgagtcaacaacacttgatttttt 45454293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 46201285 - 46201388
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    |||||||||||||||||||||||| ||||||       ||| ||||| |||||| ||||||||||||||||| | ||||||||||||||||||||| |||    
T  46201285 cttaagagtggtccaccatagatcatattaattattttaatataaactgtttgaccttttttattaaaagagtaccgttagatcatgcatgtctaccgta 46201384  T
Q  105 tctt 108  Q
    ||||    
T  46201385 tctt 46201388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 41078931 - 41079003
Alignment:
Q  58 atcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaa 130  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||||||| | |||||||||||||||||||    
T  41078931 atcttttttattaaaagatgattgttagatcatgcatgtctattgtatcttccggtgagtcaacaacacttaa 41079003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 44372884 - 44372986
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtat 105  Q
    ||||||||||||||||||||||||||||||       |||| ||||||||||||||||||| ||||||||||| | |||||| |  |||||||| | |||    
T  44372884 ttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatcttttttcttaaaagaggaccattagattacacatgtctattttat 44372983  T
Q  106 ctt 108  Q
    |||    
T  44372984 ctt 44372986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 44381740 - 44381842
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtat 105  Q
    ||||||||||||||||||||||||||||||       |||| ||||||||||||||||||| ||||||||||| | |||||| |  |||||||| | |||    
T  44381740 ttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatcttttttcttaaaagaggaccattagattacacatgtctattttat 44381839  T
Q  106 ctt 108  Q
    |||    
T  44381840 ctt 44381842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 5095228 - 5095340
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | |    
T  5095228 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 5095327  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  5095328 tgaaccaacaaca 5095340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 24051365 - 24051477
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | |    
T  24051365 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 24051464  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  24051465 tgaaccaacaaca 24051477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 39752344 - 39752422
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | ||||  ||||||||    
T  39752344 taaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaaca 39752422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 41328381 - 41328504
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||||||||||||||||||       ||||||||||||||||| |||||| | ||| |||| ||||| ||| | |||| | || | |||||| | |    
T  41328381 tggtccaccatagatcctattaattattctaatttaaaccgtttgatatttttt-taaaaggagggtcgttggattacgcatatgtattttatcttacgg 41328479  T
Q  113 tgagtcaacaacacttaattttttc 137  Q
    |||||||||||||||||||| ||||    
T  41328480 tgagtcaacaacacttaattatttc 41328504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 2414899 - 2414969
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaaga 75  Q
    ||||| |||||||||||||||||||||||||       ||||||||||||||||  |||||||||||||||    
T  2414899 cttaaaagtggtccaccatagatcctattaattttcttaatttaaaccgtttgaatttttttattaaaaga 2414969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 35295853 - 35295909
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatct 61  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  35295853 cttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatct 35295909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 28325261 - 28325343
Alignment:
Q  43 aatttaaaccgtttgatctttttta-ttaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaac 124  Q
    ||||||||||||||||||||||||| ||||| ||||||| || |||   ||| ||||| | |||||| |||||||||||||||    
T  28325261 aatttaaaccgtttgatcttttttatttaaaggaggatcattggattgcgcaagtctattttatcttacagtgagtcaacaac 28325343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 43460783 - 43460725
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttt 64  Q
    ||||||||||||||||||||||||||||||       |||||||||| |||||||||||    
T  43460783 ttaagagtggtccaccatagatcctattaattattttaatttaaaccctttgatctttt 43460725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 32255145 - 32255205
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttt 65  Q
    |||||||||||||||||||||||||||||||       ||||| ||||||||||| |||||    
T  32255145 cttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttttt 32255205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 13564200 - 13564170
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaa 35  Q
    |||||||||||||||||||||||||||||||    
T  13564200 cttaagagtggtccaccatagatcctattaa 13564170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 9662162 - 9662069
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaatttttt 136  Q
    ||||| |||| |||||||||||||    | |||||| |||| ||||||||| ||||| |||||||| || ||| ||| ||| ||||||||||||    
T  9662162 aattttaaccatttgatctttttttaagagagaggaccgttggatcatgcaagtctattgtatcttccaatgaatcatcaaaacttaatttttt 9662069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 22537714 - 22537776
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttta 67  Q
    ||||| |||| ||||||||||||||||||||       ||||||||||||||||| |||||||    
T  22537714 cttaatagtgatccaccatagatcctattaattattttaatttaaaccgtttgatttttttta 22537776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 6030431 - 6030301
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    |||||||||| || |||||||||||||||||       ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  6030431 cttaagagtgatctaccatagatcctattaatatttttaatttaaaccgtttgatcttttttattaaaagatgaacgttatatcatgcatgtctactgta 6030332  T
Q  105 tctttcagtgagtcaacaacacttaatttttt 136  Q
    |||| || |||||||||||||||||| |||||    
T  6030331 tcttcca-tgagtcaacaacacttaacttttt 6030301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 30749249 - 30749166
Alignment:
Q  43 aatttaaaccgtttgatctttttt-attaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | ||||  ||||||||    
T  30749249 aatttaaaccgtatgatcttttttgattaaaagaggaccgttagatcatgcatgtctactgtatcttacggtgaaccaacaaca 30749166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 30748633 - 30748753
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    |||||||||||  ||||||||||| ||||||       ||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||| | ||    
T  30748633 cttaagagtggcacaccatagatcatattaattattttaatttaaattgtttgatcttttttattaaaagaggatcgttaattcatgcatgtctagtata 30748732  T
Q  105 tctttcagtgagtcaacaaca 125  Q
    ||||   |||| |||||||||    
T  30748733 tcttatggtgaatcaacaaca 30748753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 42641822 - 42641738
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatca 89  Q
    ||||||||||||| |||||||||||||||||       ||||||||| |||||||||||||| ||||||||| |||||| |||||    
T  42641822 cttaagagtggtctaccatagatcctattaattattttaatttaaactgtttgatctttttttttaaaagagaatcgttggatca 42641738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 2384442 - 2384330
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||| ||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | |    
T  2384442 tggtccactatagatcctattattttttttaatataaactgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 2384343  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  2384342 tgaaccaacaaca 2384330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 40323095 - 40323207
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| |||||||||||||||||  ||||||||| | |    
T  40323095 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtcggctgtatcttactg 40323194  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  40323195 tgaaccaacaaca 40323207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 36215091 - 36215013
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    ||||||||||||||||||||| |||   ||||| ||||||||||||||||| |||||||||| | ||||  ||||||||    
T  36215091 taaaccgtttgatcttttttaataatgaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaaca 36215013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 35903665 - 35903720
Alignment:
Q  9 agagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttt 64  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  35903665 agagtggtccaccatagatcctattaaatattttaatttaaaccgtttgatctttt 35903720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 18616967 - 18616904
Alignment:
Q  4 tcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttta 67  Q
    |||||| |||||||||||||||||||||||||       ||||| ||||||||||| |||||||    
T  18616967 tcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttttttta 18616904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29219537 - 29219571
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaa 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  29219537 caatcttaaaagtggtccaccatagatcctattaa 29219571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29332836 - 29332870
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaa 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  29332836 caatcttaaaagtggtccaccatagatcctattaa 29332870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 34513515 - 34513416
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    |||||||||| ||||||||||| | ||||||       ||||||||||||||||||| |||| | |||||| |||| || ||| |||| |||||| ||||    
T  34513515 cttaagagtgatccaccatagaccttattaatttttttaatttaaaccgtttgatctgttttttaaaaagatgatcattggattatgcgtgtctattgta 34513416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 8320911 - 8321005
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtcta 99  Q
    |||||||| ||||||||||||||  ||||||       |||||||||||||||||  ||||| ||||||||||| | || ||||| ||| |||||    
T  8320911 cttaagagcggtccaccatagattatattaattattttaatttaaaccgtttgattgttttttttaaaagaggaacatttgatcacgcaagtcta 8321005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 43034431 - 43034402
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaa 35  Q
    ||||||||||||||||||||||||||||||    
T  43034431 ttaagagtggtccaccatagatcctattaa 43034402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 4921012 - 4920902
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||||||| ||||||||||       ||||||||||||||||| |||||||  ||| ||||||| || ||| | ||| || || | |||||| | |    
T  4921012 tggtccaccataaatcctattaattattctaatttaaaccgtttgatttttttta--aaaggaggatcattggattacgcaggtgtattttatcttacgg 4920915  T
Q  113 tgagtcaacaaca 125  Q
    |||||||||||||    
T  4920914 tgagtcaacaaca 4920902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 27705277 - 27705147
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    ||||| |||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||  |    
T  27705277 cttaaaagtggtccaccatagatcctattaatatttttaatttaaaccgtttgatattttttattaaaagatgatcgttagatc-tgcatgtctactaca 27705179  T
Q  105 tctttcagtgagtcaacaacacttaatttttt 136  Q
    |||| |||||||||||||||||| | ||||||    
T  27705178 tcttccagtgagtcaacaacactaactttttt 27705147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 31171014 - 31171126
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | |    
T  31171014 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 31171113  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  31171114 tgaaccaacaaca 31171126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 27262614 - 27262692
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | ||||  ||||||||    
T  27262614 taaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaaca 27262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 28393375 - 28393470
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctt 108  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| ||||||||||    
T  28393375 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatctt 28393470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30859136 - 30859061
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagag 76  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||| || ||| | |||||||    
T  30859136 caatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgattttctttttaaaaagag 30859061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 41874175 - 41874253
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    ||||||||||||||||||||| ||||  ||||| |||||||||||||| || |||||||||| | ||||  ||||||||    
T  41874175 taaaccgtttgatcttttttaataaagaaggattgttagatcatgcatatccactgtatcttactgtgaaccaacaaca 41874253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 1102772 - 1102833
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    |||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||    
T  1102772 cttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttgatctttttt 1102833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 11262547 - 11262608
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    |||||||||||||||||||||||||||||||       |||||||||| |||||||||||||    
T  11262547 cttaagagtggtccaccatagatcctattaattattataatttaaaccatttgatctttttt 11262608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 1009339 - 1009369
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaa 35  Q
    |||||||||||||||||||||||||||||||    
T  1009339 cttaagagtggtccaccatagatcctattaa 1009369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 5977005 - 5976923
Alignment:
Q  43 aatttaaaccgtttgatctttttta-ttaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaac 124  Q
    ||||||||| ||||||||||||||| ||||| ||||||| || ||| | ||| ||||| | |||||| | |||||||||||||    
T  5977005 aatttaaacagtttgatcttttttatttaaaggaggatcattggattacgcaagtctattttatcttactgtgagtcaacaac 5976923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 30910897 - 30910927
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaa 35  Q
    |||||||||||||||||||||||||||||||    
T  30910897 cttaagagtggtccaccatagatcctattaa 30910927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 22047888 - 22047949
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    |||||||||||||||||||| ||||||| ||       ||||||||||||||||| ||||||    
T  22047888 cttaagagtggtccaccataaatcctatgaattattttaatttaaaccgtttgatttttttt 22047949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 28909570 - 28909466
Alignment:
Q  4 tcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgt 103  Q
    |||||||  |||||||||||||||||||||||       ||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28909570 tcttaaggttggtccaccatagatcctattaatttttttaatttaaactggttgatcttttttattaaaagaggacggttagatcatgcatgtctactgt 28909471  T
Q  104 atctt 108  Q
    |||||    
T  28909470 atctt 28909466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 36176449 - 36176367
Alignment:
Q  54 tttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaattttttc 137  Q
    ||||||||||||||||||| || ||||||||||| ||||||| |||| ||||||| || |||||||||||||||||||||||||    
T  36176449 tttgatcttttttattaaaggatgatcgttagattatgcatgcctaccgtatcttcca-tgagtcaacaacacttaattttttc 36176367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 44175728 - 44175840
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | |    
T  44175728 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 44175827  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  44175828 tgaaccaacaaca 44175840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 3807912 - 3807834
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| | |||||||| | ||||  ||||||||    
T  3807912 taaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccattgtatcttactgtgaaccaacaaca 3807834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 12107899 - 12107845
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctact 101  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||| |||||||    
T  12107899 taaaccgtttgatcttttttattaaaggaggaccattagatcatgcaggtctact 12107845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 37981594 - 37981533
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctt 108  Q
    |||||||||||||| |||||| ||||  ||||| ||||||||||||||||| ||||||||||    
T  37981594 taaaccgtttgatcctttttaataaagaaggattgttagatcatgcatgtccactgtatctt 37981533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 26886427 - 26886529
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgta 104  Q
    |||||||||||||||||||| ||||||||||       ||||||||||||||||| |||||| ||||||| | | | || ||| ||||||||||| | ||    
T  26886427 cttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttgat-tttttttttaaaagggaaccattggattatgcatgtctatttta 26886525  T
Q  105 tctt 108  Q
    ||||    
T  26886526 tctt 26886529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 33705349 - 33705444
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctt 108  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  | |||  |||||||||||||||| ||||||||||    
T  33705349 tggtccactatagatcctattattatttttaatataaaccgtttgatcttttttaataaagaaagattattagatcatgcatgtccactgtatctt 33705444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 44182426 - 44182516
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgt 103  Q
    |||||||| |||||||||||||        ||| ||||| ||||||||||||||| ||||  ||||| ||||||||||||||||| |||||    
T  44182426 tggtccactatagatcctattattttttttaatataaactgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgt 44182516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 10301088 - 10301155
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaa 72  Q
    |||||||||| ||||||||||||||||||||       ||||||||| ||||||| |||||| |||||    
T  10301088 cttaagagtgatccaccatagatcctattaattattttaatttaaactgtttgatttttttttttaaa 10301155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 10338892 - 10338922
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaa 35  Q
    |||||||||||||||||||||||||||||||    
T  10338892 cttaagagtggtccaccatagatcctattaa 10338922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 18458617 - 18458555
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtat 105  Q
    ||||| |||| |||||||||||||    ||||||||||||| ||||||||| |||||||||||    
T  18458617 aattttaaccctttgatctttttttaagaaagaggatcgttggatcatgcaagtctactgtat 18458555  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 35371062 - 35371092
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaa 35  Q
    |||||||||||||||||||||||||||||||    
T  35371062 cttaagagtggtccaccatagatcctattaa 35371092  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 3208639 - 3208693
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgat 59  Q
    |||||||||||||||||||| ||||||||||       |||||||||||||||||    
T  3208639 cttaagagtggtccaccataaatcctattaattattataatttaaaccgtttgat 3208693  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 34819246 - 34819217
Alignment:
Q  5 cttaagagtggtccaccatagatcctatta 34  Q
    ||||||||||||||||||||||||||||||    
T  34819246 cttaagagtggtccaccatagatcctatta 34819217  T

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Target: scaffold0013 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 32764 - 32831
Alignment:
Q  43 aatttaaaccgtttgatctttt--ttattaaaagaggatcgttagatcatgcatgtctactgtatctt 108  Q
    ||||||||||||||||||||||  |||||||||||||| | |||||||||||||||||||||||||||    
T  32764 aatttaaaccgtttgatcttttttttattaaaagaggaccattagatcatgcatgtctactgtatctt 32831  T

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Target: scaffold0035 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 83175 - 83063
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||| |||||||||||||        ||| ||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| | |    
T  83175 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 83076  T
Q  113 tgagtcaacaaca 125  Q
    |||  ||||||||    
T  83075 tgaaccaacaaca 83063  T

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Target: scaffold0118 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43539 - 43473
Alignment:
Q  1 caatcttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttta 67  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||    
T  43539 caatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatttttttta 43473  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 13847842 - 13847764
Alignment:
Q  47 taaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaaca 125  Q
    ||||||||||||||||||||| ||||  |||||  |||||||||||||||| |||||||||| | ||||  ||||||||    
T  13847842 taaaccgtttgatcttttttaataaagaaggatttttagatcatgcatgtccactgtatcttactgtgaaccaacaaca 13847764  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 7311686 - 7311626
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttt 65  Q
    |||||||||||||||||||| ||||||||||       ||||||||||||||||| |||||    
T  7311686 cttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttgattttttt 7311626  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 11722948 - 11723072
Alignment:
Q  13 tggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcag 112  Q
    |||||||||||||||||||||||       ||||||||||||||||| |||||| | ||| |||| || || ||| |  || || || | | |||| | |    
T  11722948 tggtccaccatagatcctattaattattctaatttaaaccgtttgattttttttttaaaaggagggtcattggattacacaggtgtattttctcttacgg 11723047  T
Q  113 tgagtcaacaacacttaattttttc 137  Q
    |||||||||||||||||||| ||||    
T  11723048 tgagtcaacaacacttaattatttc 11723072  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 17837772 - 17837801
Alignment:
Q  6 ttaagagtggtccaccatagatcctattaa 35  Q
    ||||||||||||||||||||||||||||||    
T  17837772 ttaagagtggtccaccatagatcctattaa 17837801  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 18346711 - 18346650
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    |||||||||||||||| ||| ||||||||||       ||||||||||||||||| ||||||    
T  18346711 cttaagagtggtccactataaatcctattaattattttaatttaaaccgtttgatttttttt 18346650  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 23392369 - 23392430
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    ||||| |||||||||||||||||||||||||       ||||| ||||||||||| ||||||    
T  23392369 cttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgatatttttt 23392430  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 29381691 - 29381630
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    |||||||||| ||||||||||||||||||||       ||||| ||||||||||| ||||||    
T  29381691 cttaagagtgatccaccatagatcctattaattattttaatttcaaccgtttgatttttttt 29381630  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 127587 - 127648
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttt 66  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| ||| ||||||    
T  127587 cttaagagtggtccaccatagatcctattaatgtttttaatttaaaccgttagatttttttt 127648  T

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Target: scaffold2071 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 643 - 573
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatcttttttattaaaaga 75  Q
    |||||||||||||||||||||| | ||||||       ||||||||||||||||||| |||| | ||||||    
T  643 cttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatctgttttttaaaaaga 573  T

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Target: scaffold0077 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 54145 - 54083
Alignment:
Q  5 cttaagagtggtccaccatagatcctattaannnnnnnaatttaaaccgtttgatctttttta 67  Q
    ||||| |||||||||||||||||||||||||       ||||||||| ||||||| |||||||    
T  54145 cttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgatttttttta 54083  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 8115 - 8059
Alignment:
Q  43 aatttaaaccgtttgatcttttttattaaaagaggatcgttagatcatgcatgtcta 99  Q
    |||||||||||||||||  ||||| ||||||||||| | || ||||||||| |||||    
T  8115 aatttaaaccgtttgattgttttttttaaaagaggaccatttgatcatgcaagtcta 8059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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