View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15999_low_2 (Length: 632)

Name: NF15999_low_2
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15999_low_2
NF15999_low_2
[»] chr1 (32 HSPs)
chr1 (4-410)||(36770957-36771364)
chr1 (459-591)||(3000339-3000471)
chr1 (461-591)||(38595176-38595306)
chr1 (450-591)||(32813258-32813399)
chr1 (450-599)||(50630469-50630618)
chr1 (450-607)||(9474807-9474965)
chr1 (450-599)||(2581926-2582075)
chr1 (450-591)||(27564683-27564824)
chr1 (465-599)||(41758831-41758965)
chr1 (489-591)||(3302481-3302583)
chr1 (450-591)||(37926386-37926527)
chr1 (450-591)||(38632269-38632410)
chr1 (450-591)||(48716230-48716371)
chr1 (457-591)||(41608441-41608575)
chr1 (450-567)||(44548348-44548465)
chr1 (451-599)||(49811467-49811615)
chr1 (450-590)||(51898632-51898772)
chr1 (461-599)||(8346327-8346466)
chr1 (458-599)||(45044500-45044641)
chr1 (459-591)||(50590948-50591080)
chr1 (450-565)||(47452294-47452409)
chr1 (469-567)||(43162-43260)
chr1 (466-591)||(5958948-5959073)
chr1 (450-591)||(37649209-37649350)
chr1 (459-563)||(11152354-11152458)
chr1 (469-588)||(13414791-13414910)
chr1 (451-549)||(26440746-26440844)
chr1 (514-591)||(44332319-44332396)
chr1 (466-549)||(26274459-26274542)
chr1 (482-573)||(48489343-48489434)
chr1 (451-599)||(6260882-6261030)
chr1 (466-567)||(44454006-44454107)
[»] chr3 (28 HSPs)
chr3 (450-591)||(52629311-52629452)
chr3 (450-599)||(20764855-20765004)
chr3 (450-601)||(51419298-51419449)
chr3 (457-591)||(41189712-41189846)
chr3 (450-591)||(11347870-11348011)
chr3 (450-601)||(54868833-54868984)
chr3 (450-618)||(26754706-26754875)
chr3 (450-591)||(47531876-47532017)
chr3 (450-567)||(53982022-53982139)
chr3 (450-591)||(26141478-26141621)
chr3 (466-567)||(33644227-33644328)
chr3 (450-549)||(48587081-48587180)
chr3 (461-567)||(17470427-17470533)
chr3 (450-567)||(49607425-49607542)
chr3 (467-567)||(31456717-31456817)
chr3 (450-589)||(39670022-39670161)
chr3 (459-565)||(8076413-8076519)
chr3 (470-618)||(30801653-30801802)
chr3 (461-591)||(36331277-36331407)
chr3 (450-567)||(36707400-36707513)
chr3 (461-567)||(9563021-9563127)
chr3 (459-591)||(45058501-45058632)
chr3 (461-548)||(27714882-27714969)
chr3 (450-507)||(11095385-11095442)
chr3 (489-557)||(11907421-11907489)
chr3 (491-591)||(48375654-48375754)
chr3 (517-591)||(21746136-21746210)
chr3 (450-507)||(8956773-8956830)
[»] chr8 (26 HSPs)
chr8 (450-599)||(43414521-43414670)
chr8 (450-601)||(40423881-40424032)
chr8 (450-599)||(504061-504210)
chr8 (450-599)||(12831058-12831207)
chr8 (450-590)||(15048130-15048270)
chr8 (457-591)||(42221533-42221667)
chr8 (450-618)||(4854783-4854952)
chr8 (450-599)||(44507027-44507176)
chr8 (450-571)||(10621055-10621176)
chr8 (450-567)||(14547933-14548050)
chr8 (466-599)||(23122537-23122670)
chr8 (460-600)||(15197354-15197494)
chr8 (450-590)||(37038490-37038630)
chr8 (450-599)||(5957841-5957990)
chr8 (450-591)||(15258877-15259018)
chr8 (459-591)||(24307741-24307873)
chr8 (459-591)||(34307236-34307368)
chr8 (469-591)||(16056349-16056471)
chr8 (450-567)||(1179912-1180029)
chr8 (459-599)||(8841372-8841512)
chr8 (459-568)||(16383397-16383506)
chr8 (459-591)||(30479422-30479554)
chr8 (489-567)||(9122235-9122313)
chr8 (459-591)||(32032745-32032876)
chr8 (532-591)||(42710242-42710301)
chr8 (491-591)||(30183824-30183923)
[»] chr5 (22 HSPs)
chr5 (450-599)||(6679709-6679858)
chr5 (450-591)||(2740285-2740426)
chr5 (450-591)||(15409558-15409699)
chr5 (450-591)||(13811663-13811804)
chr5 (450-599)||(18520824-18520973)
chr5 (450-599)||(26720527-26720676)
chr5 (450-599)||(26990276-26990425)
chr5 (450-567)||(28177786-28177903)
chr5 (450-567)||(40145418-40145535)
chr5 (450-601)||(35785210-35785361)
chr5 (457-591)||(2252116-2252250)
chr5 (450-567)||(36732914-36733031)
chr5 (459-591)||(3921213-3921345)
chr5 (460-567)||(14831835-14831942)
chr5 (483-568)||(39557488-39557573)
chr5 (492-599)||(21370057-21370164)
chr5 (450-618)||(35943812-35943981)
chr5 (466-566)||(42414275-42414375)
chr5 (466-591)||(39688845-39688970)
chr5 (457-599)||(31009006-31009148)
chr5 (455-507)||(16327917-16327969)
chr5 (510-587)||(36875564-36875641)
[»] chr6 (18 HSPs)
chr6 (450-601)||(17598565-17598716)
chr6 (450-599)||(31976259-31976408)
chr6 (460-599)||(11427639-11427778)
chr6 (450-591)||(22880606-22880747)
chr6 (450-567)||(32869689-32869806)
chr6 (450-591)||(31110709-31110848)
chr6 (459-567)||(31109372-31109480)
chr6 (470-601)||(23128065-23128196)
chr6 (459-591)||(15989990-15990122)
chr6 (459-591)||(30341308-30341440)
chr6 (459-591)||(15507972-15508104)
chr6 (461-591)||(4231570-4231700)
chr6 (461-591)||(29857849-29857979)
chr6 (450-567)||(6209437-6209554)
chr6 (450-600)||(946387-946537)
chr6 (493-599)||(30870068-30870174)
chr6 (457-599)||(28536428-28536568)
chr6 (450-507)||(9379744-9379801)
[»] chr4 (31 HSPs)
chr4 (450-601)||(40574790-40574941)
chr4 (450-591)||(31910203-31910344)
chr4 (450-591)||(41236358-41236499)
chr4 (450-591)||(42044315-42044456)
chr4 (450-601)||(6034055-6034206)
chr4 (450-567)||(480419-480536)
chr4 (450-567)||(29234217-29234334)
chr4 (466-599)||(48182989-48183122)
chr4 (459-618)||(47986228-47986387)
chr4 (450-565)||(50052402-50052517)
chr4 (450-591)||(54473481-54473622)
chr4 (450-607)||(11511394-11511551)
chr4 (475-567)||(41823918-41824010)
chr4 (459-567)||(24995079-24995187)
chr4 (450-565)||(29239897-29240012)
chr4 (457-591)||(55475209-55475343)
chr4 (459-617)||(17983664-17983823)
chr4 (459-591)||(19670664-19670796)
chr4 (450-590)||(50526120-50526260)
chr4 (457-568)||(8343134-8343245)
chr4 (460-591)||(50813840-50813971)
chr4 (457-591)||(29547907-29548041)
chr4 (468-565)||(53352540-53352637)
chr4 (459-567)||(23608255-23608363)
chr4 (460-591)||(32766979-32767110)
chr4 (461-561)||(3481676-3481776)
chr4 (461-583)||(44536702-44536823)
chr4 (471-599)||(56300105-56300233)
chr4 (493-599)||(48647666-48647772)
chr4 (466-539)||(29977912-29977985)
chr4 (468-568)||(29589711-29589811)
[»] scaffold0321 (1 HSPs)
scaffold0321 (461-591)||(10057-10187)
[»] chr7 (33 HSPs)
chr7 (460-598)||(32951434-32951572)
chr7 (450-591)||(19329853-19329994)
chr7 (450-591)||(38837228-38837369)
chr7 (460-598)||(40957728-40957866)
chr7 (450-591)||(8080331-8080472)
chr7 (459-592)||(35137553-35137686)
chr7 (450-601)||(4999452-4999603)
chr7 (450-567)||(3784006-3784123)
chr7 (459-591)||(41915761-41915893)
chr7 (469-567)||(38267070-38267168)
chr7 (466-591)||(8238240-8238365)
chr7 (450-591)||(35522887-35523028)
chr7 (450-599)||(46033741-46033890)
chr7 (450-568)||(7389400-7389518)
chr7 (450-548)||(36361904-36362002)
chr7 (450-599)||(19436127-19436276)
chr7 (459-591)||(22343381-22343513)
chr7 (459-591)||(38044217-38044349)
chr7 (450-548)||(36362037-36362135)
chr7 (469-599)||(16374764-16374894)
chr7 (511-601)||(31735949-31736039)
chr7 (457-591)||(40846061-40846195)
chr7 (499-607)||(11044238-11044347)
chr7 (459-591)||(7727926-7728058)
chr7 (457-571)||(45223060-45223174)
chr7 (459-563)||(3694387-3694491)
chr7 (460-591)||(32564374-32564505)
chr7 (450-529)||(46374812-46374891)
chr7 (493-591)||(32045891-32045989)
chr7 (450-599)||(18207191-18207339)
chr7 (450-565)||(35468829-35468944)
chr7 (450-599)||(39255864-39256012)
chr7 (450-599)||(41423693-41423842)
[»] chr2 (35 HSPs)
chr2 (450-591)||(30915474-30915615)
chr2 (450-591)||(40613850-40613991)
chr2 (450-591)||(28381603-28381744)
chr2 (450-590)||(42257204-42257344)
chr2 (450-601)||(33436038-33436189)
chr2 (450-567)||(13438354-13438471)
chr2 (450-567)||(17473031-17473148)
chr2 (450-601)||(4060696-4060847)
chr2 (450-601)||(19930758-19930909)
chr2 (450-601)||(40701489-40701640)
chr2 (450-607)||(32505579-32505737)
chr2 (450-567)||(7465707-7465824)
chr2 (450-567)||(9058491-9058608)
chr2 (450-599)||(10249322-10249471)
chr2 (450-567)||(28863466-28863583)
chr2 (450-599)||(36168847-36168996)
chr2 (450-591)||(2533135-2533275)
chr2 (450-591)||(20700826-20700967)
chr2 (450-567)||(38273114-38273231)
chr2 (457-591)||(45097683-45097817)
chr2 (459-587)||(13365373-13365501)
chr2 (469-591)||(38732384-38732506)
chr2 (459-617)||(2997408-2997567)
chr2 (466-539)||(27864731-27864804)
chr2 (489-597)||(3737993-3738101)
chr2 (459-591)||(43490141-43490273)
chr2 (450-591)||(38882759-38882902)
chr2 (460-548)||(5574479-5574567)
chr2 (457-591)||(17823802-17823940)
chr2 (459-570)||(26891473-26891584)
chr2 (450-565)||(33436222-33436337)
chr2 (459-591)||(3439999-3440131)
chr2 (535-618)||(41758683-41758767)
chr2 (489-568)||(3034954-3035033)
chr2 (450-504)||(41575148-41575202)
[»] scaffold0110 (1 HSPs)
scaffold0110 (479-618)||(8783-8923)
[»] scaffold0237 (1 HSPs)
scaffold0237 (461-591)||(4051-4181)
[»] scaffold0018 (1 HSPs)
scaffold0018 (466-591)||(152525-152650)
[»] scaffold0316 (1 HSPs)
scaffold0316 (468-548)||(17083-17163)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 4 - 410
Target Start/End: Complemental strand, 36771364 - 36770957
Alignment:
Q  4 cattagcctcacatctcactctcagtacctcaccgcacagacaatatcgaaattcttgaggtgatggaaagttatttattgcttgagtg-gtggttttga 102  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||  |||||| ||||||||||    
T  36771364 cattaacctcacctctcactctcagtacctcactgcacagacaatatcgaaattcttgaggtgaaggaaagatatttactgactgagtgagtggttttga 36771265  T
Q  103 agtctccaatggagagtttcagacattgatatttgagacaatggatttgactaatctgctttcgttacctttatttactttgagactgacggaggttcgg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  36771264 agtctccaatggagagtttcagacattgatatttgagacaatggatttgactaatctgctttccttacctttatttactttgagactgagggaggttcgg 36771165  T
Q  203 atccaaaggcaactttaaagttaaagtgaaaatggcaaacaaagatacacttgcttgcttgtagcggctggctaatattctcaattctcacttttcttta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36771164 atccaaaggcaactttaaagttaaagtgaaaatggcaaacaaagatacacttgcttgcttgtagcggctggctaatattctcaattctcacttttcttta 36771065  T
Q  303 ttcttttgggactgtgtgtggtgtggggaacatagctacctagctacatacattttgtttatttcatgtaagattgcatatatgtgaagtactatcacaa 402  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36771064 ttcttttgggagtgtgtgtggtatggggaacatagctacctagctacatacattttgtttatttcatgtaagattgcatatatgtgaagtactatcacaa 36770965  T
Q  403 aattaaag 410  Q
    ||||||||    
T  36770964 aattaaag 36770957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 459 - 591
Target Start/End: Original strand, 3000339 - 3000471
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||||||||| ||||||||| |||||||||||||||| |    
T  3000339 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctcatcttctct 3000438  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||| |  ||||||||||||||||    
T  3000439 cttcctaatatatggggtgtacaagggtgtatg 3000471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 461 - 591
Target Start/End: Original strand, 38595176 - 38595306
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    |||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||||||||| ||||||||| |||||||||||||||| |||    
T  38595176 ttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctcatcttctctct 38595275  T
Q  561 tcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||| |  ||||||||||||||||    
T  38595276 tcctaatatatggggtgtacaagggtgtatg 38595306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 32813258 - 32813399
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||| ||| | |||||||||||||||||||  |||||||||||||| ||||| ||||||||| |||||||||    
T  32813258 catagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagcacactttctcttttctctc 32813357  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||||||| ||| |  ||||||||||||||||    
T  32813358 ctcttctctcttcctaatgtatggggtgtacaagggtgtatg 32813399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 50630469 - 50630618
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||||| |||||| |||||||||||||||||  | | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  50630469 catagatacccttaggtggcaatacatcctttgttacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 50630568  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| ||||||||||  ||||  ||||||||||||||||| ||||||    
T  50630569 ctcttctctcttcctaatgcatagggtgtacaagggtgtatgagaataaa 50630618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 450 - 607
Target Start/End: Complemental strand, 9474965 - 9474807
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||  ||||||||| |||||||||    
T  9474965 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacactttctcttttctctc 9474866  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa-agtgtcta 607  Q
     |||||| ||||||||||  || | |||||||||||||||||| |||||| ||||||||    
T  9474865 ctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaataaagagtgtcta 9474807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 2581926 - 2582075
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| |||||||||||||||||||    
T  2581926 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttcttttttctctc 2582025  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| ||||||||||| ||    ||||||||||||||| | ||||||    
T  2582026 ctcttctctcttcctaatacatgaggtgtacaagggtgtattagaataaa 2582075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 27564824 - 27564683
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| | ||||||| | ||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| |||||||||    
T  27564824 catagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttttctctc 27564725  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||  || |  ||||||||||||||||    
T  27564724 ctcttctctcttcctaatgcatggggtgtacaagggtgtatg 27564683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 465 - 599
Target Start/End: Original strand, 41758831 - 41758965
Alignment:
Q  465 atggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcct 564  Q
    ||||||||||| ||||||||| | |||||||||||||||||||  |||||||||||||| ||||  ||||||||| ||||||||| |||||| |||||||    
T  41758831 atggcaatacaccctttgacaaccacacaaaaatctgacacgtagtcacatggaccccgcacaaacacactttctcttttctctcctcttctctcttcct 41758930  T
Q  565 aatatatagaatgtacaagggtgtatgacaataaa 599  Q
    |||  || |  ||||||||||||||||| ||||||    
T  41758931 aatgcatggggtgtacaagggtgtatgagaataaa 41758965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 489 - 591
Target Start/End: Complemental strand, 3302583 - 3302481
Alignment:
Q  489 acacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgt 588  Q
    ||||||||||||||||||| |||| ||||||||| |||||| |||||||||||||  ||||||||||| |||||| |||||||||  |||||||||||||    
T  3302583 acacaaaaatctgacacgtaatcatatggaccccatacaagcacactttctttttcatctcatcttctctcttccaaatatatagggtgtacaagggtgt 3302484  T
Q  589 atg 591  Q
    |||    
T  3302483 atg 3302481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 37926527 - 37926386
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||||||| |||| |||||||||||| ||| ||| | ||| |||||||||||||||   |||||||| |||||||||||||||||||| ||||||||     
T  37926527 catagatatctttaggtggcaatacatcttttaacacccacataaaaatctgacacgtggccacatggatcccgtacaagtacactttctcttttctctt 37926428  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||||||| ||| |  ||||||||| ||||||    
T  37926427 ctcttctctcttcctaatgtatggggtgtacaaggatgtatg 37926386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 38632410 - 38632269
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | ||| ||||| |||||||||||||||||||  |||| ||||||||| ||||| ||||||| | |||||||||    
T  38632410 catagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttttcttttctctc 38632311  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||  || |  ||||||||||||||||    
T  38632310 ctcttctctcttcctaatgcatggggtgtacaagggtgtatg 38632269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 48716371 - 48716230
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | ||||||||| |||||||||||||||||||  |||| ||||||||| ||||| ||||||| | |||||| ||    
T  48716371 catagacacccttaggtggcaatacaccatttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttatcttttctttc 48716272  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||  || |  ||||||||||||||||    
T  48716271 ctcttctctcttcctaatgcatggggtgtacaagggtgtatg 48716230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 591
Target Start/End: Complemental strand, 41608575 - 41608441
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| |||||||||| || ||||||   |||||||||||||||| ||   || |||||||||||||||||||||||||| |||  |||  ||||||    
T  41608575 atccttaggtggcaatacaccccttgacactcacacaaaaatctgacatgtggccatatggaccccgtacaagtacactttctctttcttcttctcttct 41608476  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     ||||||||||| ||||  ||||||||||||||||    
T  41608475 ctcttcctaatacatagggtgtacaagggtgtatg 41608441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 44548465 - 44548348
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||| |||| |||||||||| | ||||| | | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  44548465 catagacatctttaggtggcaatacaccatttgatacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 44548366  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  44548365 ttcttctctcttcctaat 44548348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 451 - 599
Target Start/End: Complemental strand, 49811615 - 49811467
Alignment:
Q  451 atagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctca 550  Q
    ||||| |||||||| || ||||||| | ||||||||| |||||||||||||||||||   || || ||| ||| ||||| ||||||||| |||||||||     
T  49811615 atagacatccttaggtgacaatacaccatttgacatccacacaaaaatctgacacgtagccatatagactccgcacaagcacactttctcttttctctcc 49811516  T
Q  551 tcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
    |||||| |||||||||| |||    || |||||||||||||| ||||||    
T  49811515 tcttctctcttcctaatgtatgtggtgcacaagggtgtatgagaataaa 49811467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 590
Target Start/End: Complemental strand, 51898772 - 51898632
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||| |||| |||||||||| ||||||||| | |||||||||||||||||||  |||| |||| |||| ||||| ||||||||| ||| |||||    
T  51898772 catagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctctc 51898673  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtat 590  Q
     |||||| |||||||| |  || |  |||||||||||||||    
T  51898672 ctcttctctcttcctagtgcatggggtgtacaagggtgtat 51898632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 461 - 599
Target Start/End: Complemental strand, 8346466 - 8346327
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctt-tc 559  Q
    |||| |||||||||| | ||||||| | |||||||||||||||||||  |||| ||||||| | ||||| ||||||||| ||||||||| |||| || ||    
T  8346466 ttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccctgcacaagcacactttctcttttctctcctctttttctc 8346367  T
Q  560 ttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
    ||||||||  || || ||||||| ||||||||| ||||||    
T  8346366 ttcctaatgcatggagtgtacaaaggtgtatgagaataaa 8346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 458 - 599
Target Start/End: Complemental strand, 45044641 - 45044500
Alignment:
Q  458 tccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctt 557  Q
    ||||||| |||||||||| | ||||||| | | |||||||||||||| ||   ||||||||||||| ||||  ||| ||||| ||||||||  ||||||     
T  45044641 tccttaggtggcaatacaccatttgacacccatacaaaaatctgacatgtagccacatggaccccgcacaaacacattttctcttttctcttctcttctc 45044542  T
Q  558 tcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
    |||||||||| ||| |  ||||||||||||||||| ||||||    
T  45044541 tcttcctaatgtatggggtgtacaagggtgtatgagaataaa 45044500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 591
Target Start/End: Complemental strand, 50591080 - 50590948
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  50591080 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 50590981  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| || |  ||||||||||||||||    
T  50590980 cttcctaatacatggggtgtacaagggtgtatg 50590948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 450 - 565
Target Start/End: Complemental strand, 47452409 - 47452294
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| ||| |||||| ||||||||| | |||||||||||| ||||||  |||| |||| |||| ||||| ||||||||| |||||||||    
T  47452409 catagacacccttaggtggtaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacactttctcttttctctc 47452310  T
Q  550 atcttctttcttccta 565  Q
     |||||| ||||||||    
T  47452309 ctcttctctcttccta 47452294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 469 - 567
Target Start/End: Original strand, 43162 - 43260
Alignment:
Q  469 caatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaat 567  Q
    ||||||||||||||||| | |||||||||||||||||||  |||| ||||| ||| ||||| ||||||||| ||||||||| || ||| |||| |||||    
T  43162 caatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggactccgcacaagcacactttctcttttctctcctcctctctctttctaat 43260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 466 - 591
Target Start/End: Complemental strand, 5959073 - 5958948
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    |||||||||| |  |||||| | |||||||||||||||| ||  ||| |||||||||| ||||||||||||||| |||  |||  |||||| ||||||||    
T  5959073 tggcaatacacctcttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacactttctctttcttcttctcttctctcttccta 5958974  T
Q  566 atatatagaatgtacaagggtgtatg 591  Q
    ||| || |  ||||||||||||||||    
T  5958973 atacatggggtgtacaagggtgtatg 5958948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 37649209 - 37649350
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||| |||| ||||||||||  |||||||| | |||||||||||||||||||  |||| || |  ||| ||||| ||||||||  |||||||||    
T  37649209 catagacatctttaggtggcaatacactctttgacacccacacaaaaatctgacacgtggtcacgtgaattccgcacaagcacactttcccttttctctc 37649308  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||  || |  ||||||||||||||||    
T  37649309 ctcttctctcttcctaatgcatggggtgtacaagggtgtatg 37649350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 459 - 563
Target Start/End: Complemental strand, 11152458 - 11152354
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| |||| |||||| |||||||||||||||||||  |||  | ||||||| ||||| || |||||||||| ||||| |||||| |    
T  11152458 ccttaggtggcaatacacccttcgacatccacacaaaaatctgacacgtagtcatgtagaccccgcacaagcacgctttctttttcctctcctcttctct 11152359  T
Q  559 cttcc 563  Q
    |||||    
T  11152358 cttcc 11152354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 588
Target Start/End: Original strand, 13414791 - 13414910
Alignment:
Q  469 caatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaata 568  Q
    ||||||| ||||||||| | |||||||||||| ||||||  |||| ||||||||  ||||| ||| ||||| |||||| ||||||||| ||||||||||     
T  13414791 caatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacattttctcttttctatcatcttctctcttcctaatg 13414890  T
Q  569 tatagaatgtacaagggtgt 588  Q
     || || ||||| |||||||    
T  13414891 catggagtgtactagggtgt 13414910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 549
Target Start/End: Original strand, 26440746 - 26440844
Alignment:
Q  451 atagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    ||||| ||||||||||| ||||||| ||||| ||| | |||||||||||||||||||   |||||||| |||| | ||| ||||||||| |||||||||    
T  26440746 atagacatccttagatgacaatacaccctttaacacccacacaaaaatctgacacgtggccacatggatcccgcataagcacactttctcttttctctc 26440844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 591
Target Start/End: Complemental strand, 44332396 - 44332319
Alignment:
Q  514 atggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| ||||||| ||||||| |||  |||  |||||| ||||||||||| ||||| ||||||||||||||||    
T  44332396 atggaccccgcacaagtatactttctctttcttcttctcttctctcttcctaatacatagagtgtacaagggtgtatg 44332319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 466 - 549
Target Start/End: Original strand, 26274459 - 26274542
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||||||||| ||||||||| ||| ||||||||||||| |  |||| |||| || | ||||||||||||| | |||||||||    
T  26274459 tggcaatacatcatttgacatccacagaaaaatctgacacatagtcacgtggatcctgcacaagtacactttttcttttctctc 26274542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 573
Target Start/End: Original strand, 48489343 - 48489434
Alignment:
Q  482 gacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatag 573  Q
    |||||| |||||||||||||||| ||  |||| |||| |||| ||||| ||| ||||| ||||||| | |||||| |||||||| |||||||    
T  48489343 gacatccacacaaaaatctgacatgtggtcacgtggatcccgcacaagcacattttctattttctcacctcttctctcttcctagtatatag 48489434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 599
Target Start/End: Original strand, 6260882 - 6261030
Alignment:
Q  451 atagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctca 550  Q
    |||||||||||||| ||| |||||| || |  ||| | ||| |||||||| ||| ||  |||| ||||||||| | ||| ||| ||||| |||  ||||     
T  6260882 atagatatccttaggtggtaatacacccctgaacacccacataaaaatctaacatgtggtcacgtggaccccgcataagcacattttctatttcttctcc 6260981  T
Q  551 tcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
    |||||| |||| ||| |||||||  ||||||| ||||||||| ||||||    
T  6260982 tcttctctctttctagtatatagggtgtacaaaggtgtatgaaaataaa 6261030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 567
Target Start/End: Original strand, 44454006 - 44454107
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    ||||||||||||  |||| | | |||||||||||||||| ||  | || |||| |||  ||||| ||||||| | ||| |||||||||||| ||||||||    
T  44454006 tggcaatacatctcttgatacccacacaaaaatctgacatgtggttacgtggatcccacacaagcacactttttctttcctctcatcttctctcttccta 44454105  T
Q  566 at 567  Q
    ||    
T  44454106 at 44454107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 52629311 - 52629452
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||||||||| ||||||||| |||||||||    
T  52629311 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctc 52629410  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||| ||||||||||  || | |||||||||||||||||    
T  52629411 atcttctctcttcctaatgcatgggatgtacaagggtgtatg 52629452  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 450 - 599
Target Start/End: Complemental strand, 20765004 - 20764855
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| ||| ||||||  |||| ||| | |||||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||||    
T  20765004 catagacatccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtggccacatggaccccgtacaagcacactttctcttttctctc 20764905  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
    ||||||| |||||||||| ||| |  ||||||||||||||||| ||||||    
T  20764904 atcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaa 20764855  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 450 - 601
Target Start/End: Complemental strand, 51419449 - 51419298
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||||||||||| ||||||||||||| ||| | |||||||||||||||||||   ||||| ||||||| ||||| ||||||||| |||||||||    
T  51419449 catagacatccttagatgacaatacatcctttaacacccacacaaaaatctgacacgtggccacatagaccccgcacaagcacactttctcttttctctc 51419350  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
     | |||| |||||||||| ||| |  ||||||||||||||||  ||||||||    
T  51419349 ctattctctcttcctaatgtatggggtgtacaagggtgtatggaaataaaag 51419298  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 457 - 591
Target Start/End: Complemental strand, 41189846 - 41189712
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| |||||||||||| ||||||| | ||| |||||| ||||||||   ||||||||||||| ||||| ||||||||| ||||||||| ||||||    
T  41189846 atccttaggtggcaatacatcatttgacacccacataaaaatttgacacgtggccacatggaccccgcacaagcacactttctcttttctctcctcttct 41189747  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||| ||| || |||||||| |||||||    
T  41189746 ttcttcctaatgtatggagtgtacaagagtgtatg 41189712  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 11348011 - 11347870
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| || ||||||||||||||||||| |||||||||||||||||||   ||||||||||| | | ||| ||||||||| |||||||||    
T  11348011 catagacatccttaggtgacaatacatcctttgacatccacacaaaaatctgacacgtggccacatggaccctgcataagcacactttctcttttctctc 11347912  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||||||| ||| |  |||| |||||||||||    
T  11347911 ctcttctctcttcctaatgtatggggtgtataagggtgtatg 11347870  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 450 - 601
Target Start/End: Complemental strand, 54868984 - 54868833
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | ||||||| | |||||||||||||||||||  | || ||||||||| ||||  ||||||||| |||||||||    
T  54868984 catagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacactttctcttttctctc 54868885  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
    ||||||| ||||||||||  ||||  ||||||||||||||||  ||||||||    
T  54868884 atcttctctcttcctaatgcatagggtgtacaagggtgtatggaaataaaag 54868833  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 618
Target Start/End: Original strand, 26754706 - 26754875
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| |||| |||||| |||||||||||||||| ||  |||||||||||||| ||||| ||| ||||| ||| |||||    
T  26754706 catagacacccttaggtggcaatacacccttggacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctctttcctctc 26754805  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa-agtgtctaggcaacatttt 618  Q
     |||||| ||||||||  ||||||  ||||||| ||||||||  |||||| |||||||| | ||||||||    
T  26754806 ctcttctctcttcctagaatatagggtgtacaaaggtgtatggaaataaagagtgtctatgtaacatttt 26754875  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 47531876 - 47532017
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||||||||||||||||||| | ||| ||||| |||||| ||||||||||||   || ||| |||||| ||||| ||||||||| |||||||||    
T  47531876 catagacatccttagatggcaatacaccttttaacatccacacaagaatctgacacgtggccatatgaaccccgcacaagcacactttctcttttctctc 47531975  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     | |||| |||||||||| ||| ||||||||||| |||||||    
T  47531976 ctattctctcttcctaatgtatggaatgtacaagtgtgtatg 47532017  T

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Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 53982022 - 53982139
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  53982022 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 53982121  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  53982122 ctcttctctcttcctaat 53982139  T

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Target: chr3; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 26141621 - 26141478
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||| ||| | |||||||||||||||||||  |||||||||||||  ||||| ||||||||| |||||||||    
T  26141621 catagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcacactttctcttttctctc 26141522  T
Q  550 atcttctt--tcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||||  |||||||||| ||| |  |||||||| |||||||    
T  26141521 ctcttctttctcttcctaatgtatggggtgtacaagagtgtatg 26141478  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 466 - 567
Target Start/End: Original strand, 33644227 - 33644328
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| ||||||||| |||||| ||||||||    
T  33644227 tggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctctcttccta 33644326  T
Q  566 at 567  Q
    ||    
T  33644327 at 33644328  T

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Target: chr3; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 450 - 549
Target Start/End: Complemental strand, 48587180 - 48587081
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||||| |||||| |||||||||| ||||||||| ||||| |||||||||||||||  |||| |||| |||| ||||||||||||||| |||||||||    
T  48587180 catagatacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggatcccgcacaagtacactttctcttttctctc 48587081  T

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Target: chr3; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 461 - 567
Target Start/End: Original strand, 17470427 - 17470533
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    |||| |||||||||| | ||| ||| | |||||||||||||||||||  |||| ||||||||  ||||| ||||||||| |||||||||||||||| |||    
T  17470427 ttaggtggcaatacaccttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttctctcatcttctctct 17470526  T
Q  561 tcctaat 567  Q
    |||||||    
T  17470527 tcctaat 17470533  T

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Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 49607425 - 49607542
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| |||| |||  ||||| ||||||||| |||||||||    
T  49607425 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttttctctc 49607524  T
Q  550 atcttctttcttcctaat 567  Q
     |||| | ||||||||||    
T  49607525 ctcttttctcttcctaat 49607542  T

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Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 567
Target Start/End: Original strand, 31456717 - 31456817
Alignment:
Q  467 ggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaa 566  Q
    ||||||||| ||||||||| | |||||||||||||||||||  |||  ||||||||| ||||| ||||||||| ||||||||| |||| | |||||||||    
T  31456717 ggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcctcttttctcttcctaa 31456816  T
Q  567 t 567  Q
    |    
T  31456817 t 31456817  T

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Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 450 - 589
Target Start/End: Original strand, 39670022 - 39670161
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||  |||||||| |||| |||||||||| | |||||| |||||||| ||||  |||||| |||||| | |||||| || |||||||||    
T  39670022 catagacatccttatgtggcaatatatcccttgacatctatataaaaatttgacacgtgatcatgtggacctcgtacacgcacacttcctcttttctctc 39670121  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgta 589  Q
     |||||| ||||| |||| |||   |||||||||||||||    
T  39670122 ctcttctctcttcttaatgtatgagatgtacaagggtgta 39670161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 565
Target Start/End: Original strand, 8076413 - 8076519
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| ||||| |||| ||||||||| | |||||||||||| ||||||  |||| ||||||||| ||||| ||||||||| ||| ||||| |||||| |    
T  8076413 ccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcctcttctct 8076512  T
Q  559 cttccta 565  Q
    |||||||    
T  8076513 cttccta 8076519  T

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Target: chr3; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 618
Target Start/End: Complemental strand, 30801802 - 30801653
Alignment:
Q  470 aatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatat 569  Q
    |||||| ||||||| | | |||||||||| ||||| ||  ||| |||||||||  ||||| ||| ||||| ||| |||||||||||| |||||||| ||     
T  30801802 aatacaccctttgatacccacacaaaaatatgacatgtagtcatatggaccccacacaagcacattttctctttcctctcatcttctctcttcctagtac 30801703  T
Q  570 atagaatgtacaagggtgtatgacaataaaa-gtgtctaggcaacatttt 618  Q
    || |  ||||||||||||||||| ||||||| ||||||| | ||||||||    
T  30801702 atggggtgtacaagggtgtatgagaataaaaggtgtctatgtaacatttt 30801653  T

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Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 461 - 591
Target Start/End: Complemental strand, 36331407 - 36331277
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    |||| ||||||| || || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |||    
T  36331407 ttaggtggcaatgcaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctct 36331308  T
Q  561 tcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||| || |  ||||||||||||||||    
T  36331307 tcctaatacatggggtgtacaagggtgtatg 36331277  T

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Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 36707513 - 36707400
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||||| |||||| || ||||||| ||||||||||| |||||||||||||||||||  | || |||| ||||     | ||||||||| |||||||||    
T  36707513 catagatacccttaggtgacaatacaccctttgacatccacacaaaaatctgacacgtagttacgtggatcccg----cgcacactttctcttttctctc 36707418  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  36707417 ctcttctctcttcctaat 36707400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 567
Target Start/End: Original strand, 9563021 - 9563127
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    ||||||| ||||||| ||||||||||| | | |||||||||||||||  |||| |||| || | ||||  ||||||||| | ||||||| |||||| |||    
T  9563021 ttagatgacaatacaacctttgacatccatataaaaatctgacacgtagtcacgtggatcctgcacaaacacactttctctcttctctcctcttctctct 9563120  T
Q  561 tcctaat 567  Q
    |||||||    
T  9563121 tcctaat 9563127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 591
Target Start/End: Complemental strand, 45058632 - 45058501
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| |||| |||| | ||| |||||||||||| || | || |||||||||| ||||||| ||||||| |||  |||  |||||| |    
T  45058632 ccttaggtggcaatacaccctt-gacacccacataaaaatctgacatgtgaccatatggaccccgcacaagtatactttctctttcttcttctcttctct 45058534  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| || |  ||||||| ||||||||    
T  45058533 cttcctaatacatggggtgtacaatggtgtatg 45058501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 461 - 548
Target Start/End: Complemental strand, 27714969 - 27714882
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctct 548  Q
    |||| ||| |||||| ||||||||| | |||||||||||||||||||  |||  ||||||||| ||||| ||||||||| || |||||    
T  27714969 ttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttctctct 27714882  T

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Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 450 - 507
Target Start/End: Complemental strand, 11095442 - 11095385
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgt 507  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||    
T  11095442 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgt 11095385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 11907421 - 11907489
Alignment:
Q  489 acacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctt 557  Q
    |||||||||||||||| ||  ||| |||||||||| ||||| ||| ||||| ||||||||| |||||||    
T  11907421 acacaaaaatctgacatgtggtcatatggaccccgcacaagcacattttctcttttctctcctcttctt 11907489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 591
Target Start/End: Complemental strand, 48375754 - 48375654
Alignment:
Q  491 acaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtat 590  Q
    |||||||||||||  ||  |||||||||||||| ||||| ||| ||||| ||| ||||| |||||| ||||||||  ||||||  ||||||| | |||||    
T  48375754 acaaaaatctgacgtgtggtcacatggaccccgcacaagcacattttctctttcctctcctcttctctcttcctagaatatagggtgtacaaagatgtat 48375655  T
Q  591 g 591  Q
    |    
T  48375654 g 48375654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 517 - 591
Target Start/End: Complemental strand, 21746210 - 21746136
Alignment:
Q  517 gaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||| |||||| ||||||||| |||  ||||||||||| |||||| |||||||    ||||||||||||||||    
T  21746210 gaccccatacaagcacactttctctttcatctcatcttctctcttccaaatatatgaggtgtacaagggtgtatg 21746136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 507
Target Start/End: Original strand, 8956773 - 8956830
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgt 507  Q
    |||||| |||||||  |||||||||||||||||||| | ||| |||||| ||||||||    
T  8956773 catagacatccttatgtggcaatacatcctttgacacccacataaaaatgtgacacgt 8956830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 450 - 599
Target Start/End: Complemental strand, 43414670 - 43414521
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||||||||||||||| ||| ||||||||| | |||||||||||| ||||||  ||||||||| |||| ||||| ||||||||| |||||||||    
T  43414670 catagacatccttagatggcaacacaccctttgacacccacacaaaaatctaacacgtggtcacatggatcccgcacaagcacactttctcttttctctc 43414571  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| |||||||||| ||| |  |||||||||||||||| |||||||    
T  43414570 ctcttctctcttcctaatgtatggggtgtacaagggtgtatggcaataaa 43414521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 450 - 601
Target Start/End: Complemental strand, 40424032 - 40423881
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||  |||  ||||||||| ||||| ||||||||| |||||||||    
T  40424032 catagatacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 40423933  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
     |||||| ||||||||||| ||    ||||||||||||||||  ||||||||    
T  40423932 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgggaataaaag 40423881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 599
Target Start/End: Complemental strand, 504210 - 504061
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | ||||||| | |||||||||||||||||||  |||| ||||||||| ||||| |||| |||| |||||||||    
T  504210 catagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacattctcttttctctc 504111  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
    ||||||| ||||||||||  || |  ||||||||||||||||| ||||||    
T  504110 atcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 12831058 - 12831207
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| || ||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  12831058 catagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 12831157  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| ||||||||||  || |  ||||||||||||||||| ||||||    
T  12831158 ctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 12831207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 590
Target Start/End: Complemental strand, 15048270 - 15048130
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttct-tttttctct 548  Q
    |||||| |||||||| |||||||||| ||||||||| | |||||||||||||||||||   ||||||||||||| ||||| ||||||||| ||||| |||    
T  15048270 catagacatccttaggtggcaatacaccctttgacacc-acacaaaaatctgacacgtagccacatggaccccgcacaagcacactttctctttttatct 15048172  T
Q  549 catcttctttcttcctaatatatagaatgtacaagggtgtat 590  Q
    | |||||| |||||||||| ||| | ||||||||||||||||    
T  15048171 cctcttctctcttcctaatgtatgggatgtacaagggtgtat 15048130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 457 - 591
Target Start/End: Original strand, 42221533 - 42221667
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| || |||||||| | | |||| | ||||||||||||||||||| |||| ||||||||| |||||| ||||||||| |||  |||||||||||    
T  42221533 atccttaggtgacaatacattcctggacacccacacaaaaatctgacacgtaatcatatggaccccatacaagcacactttctctttcatctcatcttct 42221632  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||||||  ||||||||||||||||    
T  42221633 ctcttccaaatatatagggtgtacaagggtgtatg 42221667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 618
Target Start/End: Complemental strand, 4854952 - 4854783
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||| ||| ||||| |||||||||| | ||   ||||||||||| | ||||| ||||||||| |||||||||    
T  4854952 catagacatccttaggtggcaatacaccctttaacacctacataaaaatctgatatgtggccacatggaccctgcacaagcacactttctcttttctctc 4854853  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa-agtgtctaggcaacatttt 618  Q
     |||||| |||| ||||| ||| | |||||||||||| ||||| |||||| |||||||| | ||||||||    
T  4854852 ctcttctctcttactaatgtatgggatgtacaagggtatatgagaataaagagtgtctatgtaacatttt 4854783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 599
Target Start/End: Complemental strand, 44507176 - 44507027
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| ||| ||||||  |||| ||| | |||||||||||||||||||  |||| ||||||||||||||| | ||||||| |||||||||    
T  44507176 catagacacccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcatactttctcttttctctc 44507077  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
    ||||||| ||||||||||  || |  ||||||||||||||||| ||||||    
T  44507076 atcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 44507027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 10621176 - 10621055
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| ||| |||||| ||||||||| | |||||||||||||||||||   ||||| || |||| ||||| ||||||||| |||||||||    
T  10621176 catagacatccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagccacatcgatcccgcacaagcacactttctcttttctctc 10621077  T
Q  550 atcttctttcttcctaatatat 571  Q
     |||||| ||||||||||||||    
T  10621076 ctcttctctcttcctaatatat 10621055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 14547933 - 14548050
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | ||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  14547933 catagacacccttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 14548032  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  14548033 ctcttctctcttcctaat 14548050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 466 - 599
Target Start/End: Complemental strand, 23122670 - 23122537
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    |||||||||| | ||||||| | |||||||||||||||||||  |||| ||||||||| | ||| ||||||||| ||||||||| | |||| ||||||||    
T  23122670 tggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagcacactttctcttttctctcctgttctctcttccta 23122571  T
Q  566 atatatagaatgtacaagggtgtatgacaataaa 599  Q
    ||  || |  ||||||||||||||||| ||||||    
T  23122570 atgcatggggtgtacaagggtgtatgagaataaa 23122537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 460 - 600
Target Start/End: Original strand, 15197354 - 15197494
Alignment:
Q  460 cttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttc 559  Q
    ||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| ||||||||| |||| | ||    
T  15197354 cttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttttctc 15197453  T
Q  560 ttcctaatatatagaatgtacaagggtgtatgacaataaaa 600  Q
    |||| |||  ||    ||||||||||||||||  |||||||    
T  15197454 ttccaaatgcatgaggtgtacaagggtgtatgggaataaaa 15197494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 590
Target Start/End: Original strand, 37038490 - 37038630
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||| |||| |||||||||| ||||||||| | |||||||||||||||||||  |||| |||| |||| ||||| ||||||||| ||| |||||    
T  37038490 catagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctctc 37038589  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtat 590  Q
     |||||| |||||||| |  || |  |||||||||||||||    
T  37038590 ctcttctctcttcctagtgcatggggtgtacaagggtgtat 37038630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 5957841 - 5957990
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| || ||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| |||| |||| ||||  ||||||||| ||| |||||    
T  5957841 catagacattcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcacactttctctttcctctc 5957940  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| |||||||| |  ||    ||||||||||||||||| ||||||    
T  5957941 ctcttctctcttcctagtgcatgaggtgtacaagggtgtatgagaataaa 5957990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 15259018 - 15258877
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    ||||||||  ||||||||||||||||||| | |||||| ||| |||||||||||| ||  |||| ||||||| | ||||| ||| ||||| ||| |||||    
T  15259018 catagatactcttagatggcaatacatccctggacatccacataaaaatctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctc 15258919  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||  |||||| ||||||||  |||||||    
T  15258918 ctcttctctcttcctagaatataggatgtacaaaagtgtatg 15258877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 591
Target Start/End: Complemental strand, 24307873 - 24307741
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| ||||||||||||| |||||| | |||||||||||||| | ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  24307873 ccttaggtggcaatacatcccttgacacccacacaaaaatctgatatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 24307774  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| || |  ||||||||||||||||    
T  24307773 cttcctaatacatggggtgtacaagggtgtatg 24307741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 591
Target Start/End: Original strand, 34307236 - 34307368
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| ||   || ||| |||||| ||||||||||||||| |||  |||  |||||| |    
T  34307236 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggacatatgaaccccgcacaagtacactttctctttcttcttctcttctct 34307335  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||| |  ||||||||||||||||    
T  34307336 cttcctaatatatggggtgtacaagggtgtatg 34307368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 469 - 591
Target Start/End: Complemental strand, 16056471 - 16056349
Alignment:
Q  469 caatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaata 568  Q
    |||||||||| |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |||||||||||    
T  16056471 caatacatcccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctcttcctaata 16056372  T
Q  569 tatagaatgtacaagggtgtatg 591  Q
     || |  ||||||||||||||||    
T  16056371 catggggtgtacaagggtgtatg 16056349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 1180029 - 1179912
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| ||| |||||| ||||||||| | |||||||||||||||||||  |||  ||||  ||| ||||| ||||||||| |||||||||    
T  1180029 catagacacccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagcacactttctcttttctctc 1179930  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  1179929 ctcttctctcttcctaat 1179912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 459 - 599
Target Start/End: Complemental strand, 8841512 - 8841372
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| ||||| |||| ||||||||| | |||||||||||| ||||||  |||| ||||||||| ||||| ||||||||| ||| ||||| |||||| |    
T  8841512 ccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcctcttctct 8841413  T
Q  559 cttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| |  || |  |||||||| |||||||| ||||||    
T  8841412 tttcctagtgcatggggtgtacaagagtgtatgagaataaa 8841372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 568
Target Start/End: Original strand, 16383397 - 16383506
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  16383397 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 16383496  T
Q  559 cttcctaata 568  Q
    ||||||||||    
T  16383497 cttcctaata 16383506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 459 - 591
Target Start/End: Complemental strand, 30479554 - 30479422
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| ||||||||||| ||| |||||||||||| ||    | ||||||| || ||||||||||||||| |||  |||  |||||| |    
T  30479554 ccttaggtggcaatacaccctttgacatccacataaaaatctgacatgtggctatatggacctcgcacaagtacactttctctttcttcttctcttctct 30479455  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| ||    ||||||||||||||||    
T  30479454 cttcctaatacatgaggtgtacaagggtgtatg 30479422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 489 - 567
Target Start/End: Original strand, 9122235 - 9122313
Alignment:
Q  489 acacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaat 567  Q
    |||||||||||||||| ||  |||| |||| |||| ||||| ||||||||| ||||||||| |||||| ||||||||||    
T  9122235 acacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaat 9122313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 591
Target Start/End: Original strand, 32032745 - 32032876
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| ||||||||||||||| |||||| |||||||||||||||| ||   || ||||| || | ||||||||||||||| |||   ||  |||||| |    
T  32032745 ccttaggtggcaatacatcctt-gacatccacacaaaaatctgacatgtggccatatggatcctgcacaagtacactttctctttctccttctcttctct 32032843  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| ||    ||||||||||||||||    
T  32032844 cttcctaatacatgaggtgtacaagggtgtatg 32032876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 591
Target Start/End: Complemental strand, 42710301 - 42710242
Alignment:
Q  532 cactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||| ||||||||| |||||| |||||||||| ||| |  ||||||||||||||||    
T  42710301 cactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatg 42710242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 491 - 591
Target Start/End: Complemental strand, 30183923 - 30183824
Alignment:
Q  491 acaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtat 590  Q
    |||||||||||| |||| |||| ||||||  | || ||| ||||||||| |||  | |||||||||||||||| ||||||| |  |||||||| ||||||    
T  30183923 acaaaaatctgatacgtaatcatatggacttcatataagcacactttctctttcat-tcatcttctttcttccaaatatatggggtgtacaagagtgtat 30183825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 6679709 - 6679858
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||| |||| |||||||||| | ||||||| | |||||||||||||||||||  |||||||||||||| ||||  ||| ||||| |||||||||    
T  6679709 catagacatctttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacattttctcttttctctc 6679808  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| |||||||||| |||||  ||||||||||||||||||||||||    
T  6679809 ctcttctctcttcctaatgtatagggtgtacaagggtgtatgacaataaa 6679858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 2740285 - 2740426
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| |||| |||| ||||| ||||||||| |||||||||    
T  2740285 catagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctc 2740384  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
      ||||| ||||||||||  || | |||||||||||||||||    
T  2740385 cccttctctcttcctaatgcatgggatgtacaagggtgtatg 2740426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 15409699 - 15409558
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| || |||||||| |||||||| | |||||||||||||||||||   ||||||||||||| ||||| ||||| ||| |||||||||    
T  15409699 catagacatccttaggtgacaatacattctttgacacccacacaaaaatctgacacgtagccacatggaccccgcacaagcacactctctcttttctctc 15409600  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||||||| ||| |  ||||||||||||||||    
T  15409599 ctcttctctcttcctaatgtatggggtgtacaagggtgtatg 15409558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 13811663 - 13811804
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||||| ||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| || ||||||    
T  13811663 catagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttctctctc 13811762  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||  || | |||||||||| ||||||    
T  13811763 ctcttctctcttcctaatgcatgggatgtacaaggatgtatg 13811804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 599
Target Start/End: Complemental strand, 18520973 - 18520824
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||| ||||    
T  18520973 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttatctc 18520874  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| ||||||||||  ||    ||||||||||||||||| ||||||    
T  18520873 ctcttctctcttcctaatgcatgaggtgtacaagggtgtatgaaaataaa 18520824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 26720527 - 26720676
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||| ||| ||||| |||||||||||||||   |||||||| |||| ||||| ||||||||| ||||||||     
T  26720527 catagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacactttctcttttctctt 26720626  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| |||||||||| ||| |  ||||| ||||||||||| ||||||    
T  26720627 ctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaa 26720676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 26990276 - 26990425
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||| ||| ||||| |||||||||||||||   |||||||| |||| ||||| ||||||||| ||||||||     
T  26990276 catagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacactttctcttttctctt 26990375  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| |||||||||| ||| |  ||||| ||||||||||| ||||||    
T  26990376 ctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaa 26990425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 28177786 - 28177903
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||||||| | |||||||||||||||||||  |||||||||||||| ||||  ||||||||| |||||||||    
T  28177786 catagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacactttctcttttctctc 28177885  T
Q  550 atcttctttcttcctaat 567  Q
     |||||  ||||||||||    
T  28177886 ctcttccctcttcctaat 28177903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 40145418 - 40145535
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||| ||||| |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  40145418 catagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 40145517  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  40145518 ctcttctctcttcctaat 40145535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 450 - 601
Target Start/End: Original strand, 35785210 - 35785361
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | ||||||| | |||||||||||||||||||  | || |||| |||| ||||  ||||||||| |||||||||    
T  35785210 catagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggatcccgcacaatcacactttctcttttctctc 35785309  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
    ||||||| ||||||||||  || |  ||||||||||||||||  ||||||||    
T  35785310 atcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaag 35785361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 591
Target Start/End: Complemental strand, 2252250 - 2252116
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| |||||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  ||||||    
T  2252250 atccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttct 2252151  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||||||||||| |  ||||||||||||||||    
T  2252150 ctcttcctaatatatggggtgtacaagggtgtatg 2252116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 36733031 - 36732914
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| | |||||||| ||||||||| | ||||||||||||||||| |  |||| ||||||||| ||||| ||||||||| |||||||||    
T  36733031 catagacacccttaggtagcaatacaccctttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacactttctcttttctctc 36732932  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  36732931 ctcttctctcttcctaat 36732914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 459 - 591
Target Start/End: Complemental strand, 3921345 - 3921213
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  3921345 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 3921246  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||| |  ||||||||||||||||    
T  3921245 cttcctaatatatggggtgtacaagggtgtatg 3921213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 567
Target Start/End: Original strand, 14831835 - 14831942
Alignment:
Q  460 cttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttc 559  Q
    ||||| |||||||||| ||||||||| | ||| |||||||||||||||  |||| |||| |||| ||||| |||||||||||||| |||| |||||| ||    
T  14831835 cttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttcttttttttctcctcttctctc 14831934  T
Q  560 ttcctaat 567  Q
    ||||||||    
T  14831935 ttcctaat 14831942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 483 - 568
Target Start/End: Complemental strand, 39557573 - 39557488
Alignment:
Q  483 acatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaata 568  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||||  ||||||||| |||| |||| |||||| |||||||||||    
T  39557573 acatccacacaaaaatctgacacgtgatcacatggaccccatacaatcacactttctcttttatctcctcttctctcttcctaata 39557488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 492 - 599
Target Start/End: Original strand, 21370057 - 21370164
Alignment:
Q  492 caaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||| ||  |||| ||||||||| ||||  ||| ||||| ||| ||||||||||||||||||||| ||||||  |||||||| ||||||||    
T  21370057 caaaaatctgacatgtggtcacgtggaccccgcacaaacacattttctctttcctctcatcttctttcttcctagtatataagatgtacaaaggtgtatg 21370156  T
Q  592 acaataaa 599  Q
    | ||||||    
T  21370157 aaaataaa 21370164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 618
Target Start/End: Complemental strand, 35943981 - 35943812
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||||| ||||||| | |||||||||||||||||||  | || |||| |||  ||||| ||||||||| ||| |||||    
T  35943981 catagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagcacactttctctttcctctc 35943882  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaa-gtgtctaggcaacatttt 618  Q
     |||| | |||||||| |  || |  ||||||||||||||||  ||||||| ||||||| | ||||||||    
T  35943881 ctcttttctcttcctagtgcatggggtgtacaagggtgtatggaaataaaatgtgtctatgtaacatttt 35943812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 466 - 566
Target Start/End: Complemental strand, 42414375 - 42414275
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    |||||||||| ||||||||| | |||||||||||||||||||  |||  ||||||||| ||||| ||||||| | |||||| || |||||| ||||||||    
T  42414375 tggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttatcttttctttcctcttctctcttccta 42414276  T
Q  566 a 566  Q
    |    
T  42414275 a 42414275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 591
Target Start/End: Complemental strand, 39688970 - 39688845
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    ||||||||||||| |||||| | |||||||||||||| | ||  ||| ||| |||||| | ||||||||||||| |||  |||  |||||| ||||||||    
T  39688970 tggcaatacatcccttgacacccacacaaaaatctgatatgtggtcatatgaaccccgcataagtacactttctctttcttcttttcttctctcttccta 39688871  T
Q  566 atatatagaatgtacaagggtgtatg 591  Q
    ||| ||||  ||||||| ||||||||    
T  39688870 atacatagggtgtacaaaggtgtatg 39688845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 457 - 599
Target Start/End: Original strand, 31009006 - 31009148
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| || |||||||| |||  ||| | |||||||||||||||||||  |||| |||| |||| ||||| ||||||||| ||| ||||  ||||||    
T  31009006 atccttaggtgacaatacattcttccacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctcttctcttct 31009105  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||||| |  || |  ||||||| ||||||||| ||||||    
T  31009106 ctcttcctagtgcatggggtgtacaaaggtgtatgagaataaa 31009148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 507
Target Start/End: Original strand, 16327917 - 16327969
Alignment:
Q  455 atatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgt 507  Q
    |||||||||| ||||||||||||| |||||| | ||| |||||||||||||||    
T  16327917 atatccttaggtggcaatacatccattgacacccacataaaaatctgacacgt 16327969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 587
Target Start/End: Complemental strand, 36875641 - 36875564
Alignment:
Q  510 tcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtg 587  Q
    |||| |||| |||| ||||| ||||||||| |||| |||| |||||| ||||||||||| || |  ||||||||||||    
T  36875641 tcacgtggatcccgcacaagcacactttctcttttttctcctcttctctcttcctaatacatggggtgtacaagggtg 36875564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 450 - 601
Target Start/End: Original strand, 17598565 - 17598716
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||||| ||||||| | |||||||||||||||||||| |||| ||||||||| ||||| ||||||||| |||||||||    
T  17598565 catagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcacactttctcttttctctc 17598664  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
     |||||| ||||||||||  || |  ||||||||||||||||  ||||||||    
T  17598665 ctcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaag 17598716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 31976259 - 31976408
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||| | ||||| ||| | |||||||||||||||||||  ||||||| |||||| ||||| ||||||||| |||||||||    
T  31976259 catagacatccttaggtggcaatataccctttaacacccacacaaaaatctgacacgtggtcacatgaaccccgcacaagcacactttctcttttctctc 31976358  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| |||||||||| ||| |  ||||||||||||||||| ||||||    
T  31976359 ctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaa 31976408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 460 - 599
Target Start/End: Original strand, 11427639 - 11427778
Alignment:
Q  460 cttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttc 559  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||  |||| |||| |||| ||||| ||||||||| ||||||||| |||||| ||    
T  11427639 cttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctc 11427738  T
Q  560 ttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
    ||||||||  || |  ||||||||||||||||| ||||||    
T  11427739 ttcctaatgcatggggtgtacaagggtgtatgagaataaa 11427778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 22880747 - 22880606
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||| ||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  22880747 catagacacccttaggtggcaatacaccctttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 22880648  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||| || |  ||||||||||||||||    
T  22880647 ctcttctctcttcctaatacatggggtgtacaagggtgtatg 22880606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 32869689 - 32869806
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  32869689 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 32869788  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  32869789 ctcttctctcttcctaat 32869806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 31110848 - 31110709
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||||||| || |||||||||||||||||| | ||||||||||| | ||||| ||||||||| ||||||||     
T  31110848 catagacatccttaggtggcaatacaccctttgaca-ct-cacaaaaatctgacacgtaaccacatggaccctgcacaagcacactttctcttttctcta 31110751  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||||||| ||| |  ||||||| ||||||||    
T  31110750 ctcttctctcttcctaatgtatggggtgtacaaaggtgtatg 31110709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 459 - 567
Target Start/End: Complemental strand, 31109480 - 31109372
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||||||  |||| | ||||||| | ||||||||||||| ||||||||| |||| | |    
T  31109480 ccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcacgtagaccccgcaaaagtacactttctcttttctctcctcttttct 31109381  T
Q  559 cttcctaat 567  Q
    |||||||||    
T  31109380 cttcctaat 31109372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 470 - 601
Target Start/End: Complemental strand, 23128196 - 23128065
Alignment:
Q  470 aatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatat 569  Q
    |||||||||||||||| | |||||||||||||||||||  |||| |||| |||  ||||| ||||||||| ||||||||| |||| | ||||||||||      
T  23128196 aatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttttctctcctcttttctcttcctaatgc 23128097  T
Q  570 atagaatgtacaagggtgtatgacaataaaag 601  Q
    || | |||||||||||||||||  ||||||||    
T  23128096 atgggatgtacaagggtgtatggaaataaaag 23128065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 459 - 591
Target Start/End: Complemental strand, 15990122 - 15989990
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  15990122 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 15990023  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||| |  ||||||||||||||||    
T  15990022 cttcctaatatatggggtgtacaagggtgtatg 15989990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 459 - 591
Target Start/End: Complemental strand, 30341440 - 30341308
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  30341440 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 30341341  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||| |  ||||||||||||||||    
T  30341340 cttcctaatatatggggtgtacaagggtgtatg 30341308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 591
Target Start/End: Complemental strand, 15508104 - 15507972
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  15508104 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 15508005  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||| |  ||||||||| ||||||    
T  15508004 cttcctaatatatggggtgtacaaggatgtatg 15507972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 591
Target Start/End: Original strand, 4231570 - 4231700
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    |||| |||||||||| || ||| || | |||||||||||||||||||   || |||||||||| ||||||||||||||| |||  |||  |||||| |||    
T  4231570 ttaggtggcaatacaccccttgccacccacacaaaaatctgacacgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctct 4231669  T
Q  561 tcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||| || |  ||||||||||||||||    
T  4231670 tcctaatacatggggtgtacaagggtgtatg 4231700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 461 - 591
Target Start/End: Original strand, 29857849 - 29857979
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    ||||||||||||||| | ||| ||| | |||||||||||||||||||  | || |||| |||| | ||| ||||||||| ||||||||  |||||| |||    
T  29857849 ttagatggcaatacaccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttctcttttctcttctcttctctct 29857948  T
Q  561 tcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||  || |  ||||||||||||||||    
T  29857949 tcctaatgcatggggtgtacaagggtgtatg 29857979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 6209554 - 6209437
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| ||||||||||   |||||||   ||||||||||||| |||||  |||| ||||||||| || || ||||||||| |||||||||    
T  6209554 catagacacccttaggtggcaatacactatttgacactcacacaaaaatctgtcacgtagtcacgtggaccccgcactagcacactttctcttttctctc 6209455  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  6209454 ctcttctctcttcctaat 6209437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 600
Target Start/End: Original strand, 946387 - 946537
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| ||  |||||| ||||||||| |||| |||||||||||||| |  |||| |  | ||||  | || ||||||||| |||||||||    
T  946387 catagacatccttaggtgataatacaccctttgacacctacccaaaaatctgacacctagtcacgtaaatcccgctctagcacactttctcttttctctc 946486  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaa 600  Q
     |||||| ||||||||||  ||   |||||||||  |||||||||||||||    
T  946487 ctcttctctcttcctaatgcatgagatgtacaagaatgtatgacaataaaa 946537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 493 - 599
Target Start/End: Original strand, 30870068 - 30870174
Alignment:
Q  493 aaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatga 592  Q
    |||||||| ||| ||  |||||||||||||| ||||| ||| ||||| ||| ||||| |||||| |||| ||| |||||||  ||||||| |||||||||    
T  30870068 aaaaatctaacatgtggtcacatggaccccgcacaagcacattttctctttcctctcctcttctctctttctagtatatagggtgtacaaaggtgtatga 30870167  T
Q  593 caataaa 599  Q
     ||||||    
T  30870168 aaataaa 30870174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 599
Target Start/End: Complemental strand, 28536568 - 28536428
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| |||||||||| || |||||| | ||||||||||||||||||   |||  ||||||||  ||||| ||||||||| |||| |||  |||||     
T  28536568 atccttaggtggcaatacaacccttgacacccacacaaaaatctgacacg--gtcatgtggaccccacacaagcacactttctcttttatcttctcttcc 28536471  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||||| |  || |  ||||||||||||||||| ||||||    
T  28536470 ctcttcctactgcatggggtgtacaagggtgtatgaaaataaa 28536428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 507
Target Start/End: Complemental strand, 9379801 - 9379744
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgt 507  Q
    |||||| ||||||||||| |||||||||| |||||| | | |||||||| ||||||||    
T  9379801 catagacatccttagatgacaatacatcccttgacacccatacaaaaatttgacacgt 9379744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 450 - 601
Target Start/End: Original strand, 40574790 - 40574941
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| ||| |||||| ||||||||| | |||||||||||||||||| |   ||||||| |||| ||||| ||||||||| |||||||||    
T  40574790 catagacatccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgctgctacatggatcccgaacaagcacactttctcttttctctc 40574889  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
     |||||| |||||||||||||| |  ||||||||||||||||| ||||||||    
T  40574890 ctcttctctcttcctaatatatggggtgtacaagggtgtatgagaataaaag 40574941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 31910203 - 31910344
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| || |||||||  |||||||| | ||||||||||||||||| |   ||||||||||||| ||||| ||||||||| |||||||||    
T  31910203 catagacatccttaggtgacaatacactctttgacacccacacaaaaatctgacacatagccacatggaccccgcacaagcacactttctcttttctctc 31910302  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||| |||||||||| ||| | ||||||||| |||||||    
T  31910303 atcttctctcttcctaatgtatgggatgtacaagagtgtatg 31910344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 41236358 - 41236499
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | ||||||||| |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  41236358 catagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 41236457  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||  || |  ||||||||||||||||    
T  41236458 ctcttctctcttcctaatgcatggggtgtacaagggtgtatg 41236499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 42044456 - 42044315
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||||||||  ||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  42044456 catagacacccttaggtggcaatacatccttgtacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 42044357  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||  || | |||||||||||||||||    
T  42044356 ctcttctctcttcctaatgcatgggatgtacaagggtgtatg 42044315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 450 - 601
Target Start/End: Original strand, 6034055 - 6034206
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||| ||  |||| |||| |||| ||||| ||||||||| |||||||||    
T  6034055 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttttctctc 6034154  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
     |||||| ||||||||||  || |  ||||||||||||||||| ||||||||    
T  6034155 ctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaag 6034206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 480536 - 480419
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| || ||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||||||||| ||||||||| |||||||||    
T  480536 catagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctc 480437  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  480436 ctcttctctcttcctaat 480419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 29234334 - 29234217
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | ||||||||||||||||| ||||||| | || ||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  29234334 catagacacccttagatggcaatacaccctttgataccttcacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 29234235  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  29234234 ctcttctctcttcctaat 29234217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 466 - 599
Target Start/End: Complemental strand, 48183122 - 48182989
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| ||||||||| |||||| ||||| ||    
T  48183122 tggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctctcttctta 48183023  T
Q  566 atatatagaatgtacaagggtgtatgacaataaa 599  Q
    ||  || |  ||||||||||||||||| ||||||    
T  48183022 atgcatggggtgtacaagggtgtatgagaataaa 48182989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 459 - 618
Target Start/End: Original strand, 47986228 - 47986387
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  | |  |||||| |    
T  47986228 ccttaggtggcaatacatcccttgacatccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttattctcttctct 47986327  T
Q  559 cttcctaatatatagaatgtacaagggtgtatgacaataaaagtgtctaggcaacatttt 618  Q
    |||||||||| || | |||||||||||||||||  | |||| ||||||| | ||||||||    
T  47986328 cttcctaatacatgggatgtacaagggtgtatgcaattaaaggtgtctatgtaacatttt 47986387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 450 - 565
Target Start/End: Complemental strand, 50052517 - 50052402
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| ||| |||||    
T  50052517 catagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctctttcctctc 50052418  T
Q  550 atcttctttcttccta 565  Q
     |||||| ||||||||    
T  50052417 ctcttctctcttccta 50052402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 54473622 - 54473481
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| || ||||||| | ||||||| | |||||||||||| ||||||  |||| ||||||||| ||||| ||||||| | |||||||||    
T  54473622 catagacacccttaggtgacaatacaccatttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttatcttttctctc 54473523  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||| || || ||||||||||||||||    
T  54473522 ctcttctctcttcctaatacatggagtgtacaagggtgtatg 54473481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 607
Target Start/End: Complemental strand, 11511551 - 11511394
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | ||| |||||||||||||||  |||| ||||||||| ||||| ||||||||| ||||||||     
T  11511551 catagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctt 11511452  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaagtgtcta 607  Q
     |||||| ||||| ||||  ||    ||||||||||||||||  |||||| |||||||    
T  11511451 ctcttctctcttcttaatgcatgaggtgtacaagggtgtatggaaataaatgtgtcta 11511394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 475 - 567
Target Start/End: Original strand, 41823918 - 41824010
Alignment:
Q  475 atcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaat 567  Q
    ||||||| ||| | |||||||||||||||||||  |||||||||||||| ||||| ||||||||| ||||||||| |||||| ||||||||||    
T  41823918 atcctttaacacccacacaaaaatctgacacgtagtcacatggaccccgcacaagcacactttctcttttctctcttcttctctcttcctaat 41824010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 567
Target Start/End: Complemental strand, 24995187 - 24995079
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    ||||||||||||||||| ||||||||| | ||| |||||| ||||||||  |||| ||||||||| ||||| ||| ||||| ||||||||| |||||| |    
T  24995187 ccttagatggcaatacaccctttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacattttctcttttctctcctcttctct 24995088  T
Q  559 cttcctaat 567  Q
    |||| ||||    
T  24995087 cttcttaat 24995079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 450 - 565
Target Start/End: Original strand, 29239897 - 29240012
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | ||||||||| |||||||||||| ||||||  |||| ||||||||  ||||| ||||||||| ||| |||||    
T  29239897 catagacacccttaggtggcaatacaccatttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacactttctctttcctctc 29239996  T
Q  550 atcttctttcttccta 565  Q
     |||||| ||||||||    
T  29239997 ctcttctctcttccta 29240012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 457 - 591
Target Start/End: Original strand, 55475209 - 55475343
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| |||||||||| ||||||||| | |||||||||||||||| ||   || |||||||| | | ||||||||||||| |||  |||  ||||||    
T  55475209 atccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtggccatatggaccctgcataagtacactttctctttcttcttctcttct 55475308  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     ||||||||||| || |  ||||||||||||||||    
T  55475309 ctcttcctaatacatggggtgtacaagggtgtatg 55475343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 459 - 617
Target Start/End: Complemental strand, 17983823 - 17983664
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  17983823 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 17983724  T
Q  559 cttcctaatatatagaatgtacaagggtgtatgacaat--aaaagtgtctaggcaacattt 617  Q
    |||||||||| ||    |||||||||||||||| ||||  ||||||||||| | |||||||    
T  17983723 cttcctaatacatgaggtgtacaagggtgtatg-caattaaaaagtgtctatgtaacattt 17983664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 459 - 591
Target Start/End: Complemental strand, 19670796 - 19670664
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || ||||||   |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  19670796 ccttaggtggcaatacaccccttgacactcacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 19670697  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| || |  ||||||||||||||||    
T  19670696 cttcctaatacatggggtgtacaagggtgtatg 19670664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 450 - 590
Target Start/End: Complemental strand, 50526260 - 50526120
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||| |||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||  ||| ||||| || |||||| ||| |||||    
T  50526260 catagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggtcacgtggattccgcacaagcacgctttctatttcctctc 50526161  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtat 590  Q
     |||||| |||||||| |  || |  |||||||||||||||    
T  50526160 ctcttctctcttcctagtgcatggggtgtacaagggtgtat 50526120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 457 - 568
Target Start/End: Complemental strand, 8343245 - 8343134
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||| ||   || |||||||||| | ||||| ||||||| |||  |||  ||||||    
T  8343245 atccttaggtggcaatacatcctttgacacctacataaaaatctgacatgtggccatatggaccccgcataagtatactttctctttcttcttctcttct 8343146  T
Q  557 ttcttcctaata 568  Q
     |||||||||||    
T  8343145 ctcttcctaata 8343134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 460 - 591
Target Start/End: Complemental strand, 50813971 - 50813840
Alignment:
Q  460 cttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttc 559  Q
    ||||| ||| |||||| || |||||| | |||||||||||||||| ||  ||| ||| |||||| ||||||||||||||| |||  |||  |||||| ||    
T  50813971 cttaggtggtaatacaccccttgacacccacacaaaaatctgacatgtggtcatatgaaccccgcacaagtacactttctctttcttcttctcttctctc 50813872  T
Q  560 ttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||| ||   |||||||||||||||||    
T  50813871 ttcctaatacatgagatgtacaagggtgtatg 50813840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 591
Target Start/End: Complemental strand, 29548041 - 29547907
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| ||||||||||||| |||||| | |||||||||||||||| ||   || ||||| |||| | ||||||||||| | |||  |||  ||||||    
T  29548041 atccttaggtggcaatacatcccttgacacccacacaaaaatctgacatgtggccatatggatcccgcataagtacactttttctttcttcttctcttct 29547942  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     ||||||||||| || |  ||||||||||||||||    
T  29547941 ctcttcctaatacatggggtgtacaagggtgtatg 29547907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 565
Target Start/End: Complemental strand, 53352637 - 53352540
Alignment:
Q  468 gcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    ||||||||| |||| ||| |||||||||||||||||||||  | |  ||||||||| ||||| | ||||||| ||||||||| |||||| ||||||||    
T  53352637 gcaatacattctttaacacctacacaaaaatctgacacgtagttaagtggaccccgcacaagcatactttctcttttctctcctcttctctcttccta 53352540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 459 - 567
Target Start/End: Original strand, 23608255 - 23608363
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    ||||||||| ||||||| | ||||||| | |||||||||||||||||||  |||| || || ||  ||||| ||||||||| |||| |||| |||||| |    
T  23608255 ccttagatgacaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtgaactccacacaagcacactttctcttttatctcctcttctct 23608354  T
Q  559 cttcctaat 567  Q
    |||||||||    
T  23608355 cttcctaat 23608363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 591
Target Start/End: Original strand, 32766979 - 32767110
Alignment:
Q  460 cttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttc 559  Q
    ||||| |||||||||| || |||||| | | |||||||||||||| ||   || |||||||| | ||||||||||||||| |||  |||  || ||| ||    
T  32766979 cttaggtggcaatacaccccttgacacccatacaaaaatctgacatgtggccatatggaccctgcacaagtacactttctctttcttcttctcctctctc 32767078  T
Q  560 ttcctaatatatagaatgtacaagggtgtatg 591  Q
    || |||||| ||||| ||||||||||||||||    
T  32767079 tttctaatacatagagtgtacaagggtgtatg 32767110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 561
Target Start/End: Original strand, 3481676 - 3481776
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    |||| ||||||||||  |||||||| | ||||||||||||||||| |  |||| ||||||||  ||||| ||||||||| ||| ||| |||||||| |||    
T  3481676 ttaggtggcaatacactctttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagcacactttctctttcctcccatcttctctct 3481775  T
Q  561 t 561  Q
    |    
T  3481776 t 3481776  T

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Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 583
Target Start/End: Complemental strand, 44536823 - 44536702
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    |||| |||||||||| |||| |||||| |||||||||||||||| ||  ||| || ||||||  | ||||||||||||| |||  |||  |||||| |||    
T  44536823 ttaggtggcaatacaccctt-gacatccacacaaaaatctgacatgtggtcatatagaccccacataagtacactttctctttcttcttctcttctctct 44536725  T
Q  561 tcctaatatatagaatgtacaag 583  Q
    |||||||| ||||  ||||||||    
T  44536724 tcctaatacatagggtgtacaag 44536702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 599
Target Start/End: Complemental strand, 56300233 - 56300105
Alignment:
Q  471 atacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatata 570  Q
    ||||||| ||||||||| |||||||||||||||| ||  ||| ||| | || | ||||  ||||||||| ||| ||||| |||||| |||| ||||| ||    
T  56300233 atacatcatttgacatccacacaaaaatctgacatgtggtcatatgaatcctgcacaaacacactttctctttcctctcctcttctctctttctaatgta 56300134  T
Q  571 tagaatgtacaagggtgtatgacaataaa 599  Q
    |   |||||||||  ||||||| ||||||    
T  56300133 tgagatgtacaagattgtatgagaataaa 56300105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 599
Target Start/End: Complemental strand, 48647772 - 48647666
Alignment:
Q  493 aaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatga 592  Q
    |||||||| ||||||  |||| ||||| ||| ||||| ||| ||||| ||| ||||| |||||| |||||||| |  ||||||||||||| | ||||| |    
T  48647772 aaaaatctaacacgtggtcacgtggactccgcacaagcacaatttctctttcctctcctcttctctcttcctagtgcatagaatgtacaaagatgtataa 48647673  T
Q  593 caataaa 599  Q
     ||||||    
T  48647672 aaataaa 48647666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 539
Target Start/End: Original strand, 29977912 - 29977985
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttct 539  Q
    |||||||||| || || ||| | |||||||||||||||||||  ||| |||||||||  ||||| |||||||||    
T  29977912 tggcaatacaccccttaacacccacacaaaaatctgacacgtagtcatatggaccccacacaagcacactttct 29977985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 568
Target Start/End: Complemental strand, 29589811 - 29589711
Alignment:
Q  468 gcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaat 567  Q
    |||||||| || |||||| | |||||||||||||| | ||   || |||||||||  ||||||||||||||| |||  |||  |||||| ||||||||||    
T  29589811 gcaatacaccccttgacacccacacaaaaatctgatatgtggccatatggaccccacacaagtacactttctctttcttcttctcttctctcttcctaat 29589712  T
Q  568 a 568  Q
    |    
T  29589711 a 29589711  T

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Target: scaffold0321 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 461 - 591
Target Start/End: Complemental strand, 10187 - 10057
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||||  |||| |||||| |||||||| ||||||||| ||||||||| |||||| |||    
T  10187 ttaggtggcaatacatcctttgacatccacataaaaatctgacacgtagtcacgtggaccgcgtacaagcacactttctcttttctctcctcttctctct 10088  T
Q  561 tcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||  ||||  ||||||||||||||||    
T  10087 tcctaatgcatagggtgtacaagggtgtatg 10057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 460 - 598
Target Start/End: Complemental strand, 32951572 - 32951434
Alignment:
Q  460 cttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttc 559  Q
    |||||||| ||||||||||||| ||||| |||||||||||| ||||||  |||| ||||||||| ||||| ||||||||| ||||||||| |||||| ||    
T  32951572 cttagatgacaatacatcctttaacatccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctctc 32951473  T
Q  560 ttcctaatatatagaatgtacaagggtgtatgacaataa 598  Q
    ||||||||| || |  ||||||||||||||||| |||||    
T  32951472 ttcctaatacatggggtgtacaagggtgtatgagaataa 32951434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 19329853 - 19329994
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| | ||||||| | ||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| |||||||||    
T  19329853 catagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttttctctc 19329952  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||  || |  ||||||||||||||||    
T  19329953 ctcttctctcttcctaatgcatggggtgtacaagggtgtatg 19329994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 38837228 - 38837369
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||  ||| |||||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  38837228 catagacacccttaggtggcaatacacccttgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 38837327  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| ||||||||||  || | |||||||||||||||||    
T  38837328 ctcttctctcttcctaatgcatgggatgtacaagggtgtatg 38837369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 460 - 598
Target Start/End: Original strand, 40957728 - 40957866
Alignment:
Q  460 cttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttc 559  Q
    ||||| ||||||||||  |||||| | | |||||||||||||||||||  |||| |||| |||||||||| ||||||||| |||||||||||||||| ||    
T  40957728 cttaggtggcaatacactctttgatacccacacaaaaatctgacacgtagtcacgtggatcccgtacaagcacactttctcttttctctcatcttctctc 40957827  T
Q  560 ttcctaatatatagaatgtacaagggtgtatgacaataa 598  Q
    ||||||||  || |  ||||||||||||||||| |||||    
T  40957828 ttcctaatgcatggggtgtacaagggtgtatgaaaataa 40957866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 8080472 - 8080331
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| ||||| |||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  8080472 catagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 8080373  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||||| |  || |  ||||||||||||||||    
T  8080372 ctcttctctcttcctattgcatggggtgtacaagggtgtatg 8080331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 459 - 592
Target Start/End: Original strand, 35137553 - 35137686
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| ||||||||| | |||||||||||| ||||||  |||| ||||||||| ||||  ||||||||| ||||||||| |||||| |    
T  35137553 ccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaaacacactttctcttttctctcctcttctct 35137652  T
Q  559 cttcctaatatatagaatgtacaagggtgtatga 592  Q
    |||||||||  || | ||||||||||||||||||    
T  35137653 cttcctaatgcatgggatgtacaagggtgtatga 35137686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 450 - 601
Target Start/End: Complemental strand, 4999603 - 4999452
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | ||||||||||||||||| | ||||||| | |||||||||||||| ||||  |||| ||||||||| ||||  ||||||||| |||| ||||    
T  4999603 catagacacccttagatggcaatacaccttttgacacccacacaaaaatctgatacgtagtcacgtggaccccgcacaaacacactttctcttttatctc 4999504  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
     |||||| ||||||||||  || |  ||||||||||||||||| ||||||||    
T  4999503 ctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaag 4999452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 3784006 - 3784123
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||||| ||||||| | |||||||||||||||||||  |||| |||| |||| ||||| ||||||||| |||||||||    
T  3784006 catagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctc 3784105  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  3784106 ctcttctctcttcctaat 3784123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 459 - 591
Target Start/End: Original strand, 41915761 - 41915893
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| |||||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  41915761 ccttaggtggcaatacaccccttgacacctacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 41915860  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||| |  ||||||||||||||||    
T  41915861 cttcctaatatatggggtgtacaagggtgtatg 41915893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 469 - 567
Target Start/End: Original strand, 38267070 - 38267168
Alignment:
Q  469 caatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaat 567  Q
    ||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| ||||||||| |||||| ||||||||||    
T  38267070 caatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctctcttcctaat 38267168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 466 - 591
Target Start/End: Original strand, 8238240 - 8238365
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    |||||||||| ||||||||| | |||||||||||||||| ||  ||| |||||||||| ||||||||||||||| |||  |||  |||||| ||||||||    
T  8238240 tggcaatacaccctttgacacccacacaaaaatctgacatgtagtcatatggaccccgcacaagtacactttctctttcttcttctcttctctcttccta 8238339  T
Q  566 atatatagaatgtacaagggtgtatg 591  Q
    ||| || |  ||||||||||||||||    
T  8238340 atacatggggtgtacaagggtgtatg 8238365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 35522887 - 35523028
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||  |||||||||| | ||| ||| | |||||||||||||||||||   || ||||| |||| ||||| ||||||||| |||||||||    
T  35522887 catagacatccttaagtggcaatacaccatttaacacccacacaaaaatctgacacgtggccatatggatcccgcacaagcacactttctcttttctctc 35522986  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||||||| ||| |  ||||||||||||||||    
T  35522987 ttcttctctcttcctaatgtatggggtgtacaagggtgtatg 35523028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 599
Target Start/End: Complemental strand, 46033890 - 46033741
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    ||||||||| ||||| |||||||||| ||||| ||| | ||| |||||||||||||||  ||||||| || ||| ||||| | | ||||| |||||||||    
T  46033890 catagatattcttaggtggcaatacaccctttaacacccacataaaaatctgacacgtggtcacatgaactccgcacaagcatattttctcttttctctc 46033791  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| | |||||||| ||| |  ||||||||||||||||| ||||||    
T  46033790 ctcttctctattcctaatgtatggggtgtacaagggtgtatgagaataaa 46033741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 450 - 568
Target Start/End: Original strand, 7389400 - 7389518
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| ||||||||||  |||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  7389400 catagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 7389499  T
Q  550 atcttctttcttcctaata 568  Q
     |  ||| |||||||||||    
T  7389500 ctactctctcttcctaata 7389518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 450 - 548
Target Start/End: Complemental strand, 36362002 - 36361904
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctct 548  Q
    |||||| | |||||| |||||||||||||||||||| | |||||||||||||||||||  |||| ||||||||  ||||| ||||||||| ||||||||    
T  36362002 catagacacccttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttctct 36361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 450 - 599
Target Start/End: Complemental strand, 19436276 - 19436127
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| || ||||||| | ||||||| | |||||||||||||||||||  |||| |||| |||| | ||| ||||||||| ||||||||     
T  19436276 catagacatccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagcacactttctcttttctctt 19436177  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||| | ||||||||||  || |  ||||||||||||||||| ||||||    
T  19436176 ctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 19436127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 591
Target Start/End: Original strand, 22343381 - 22343513
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| || | || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  22343381 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacactttctctttcttcttctcttctct 22343480  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| ||    ||||||||||||||||    
T  22343481 cttcctaatacatgaggtgtacaagggtgtatg 22343513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 591
Target Start/End: Original strand, 38044217 - 38044349
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||||| |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||| | |    
T  38044217 ccttaggtggcaatacaccccttgacatccacacaaaaatctgacatgtagccatatggaccccgcacaagtacactttctctttcttcttctcttttct 38044316  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| || |  ||||||||||||||||    
T  38044317 cttcctaatacatggggtgtacaagggtgtatg 38044349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 450 - 548
Target Start/End: Original strand, 36362037 - 36362135
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctct 548  Q
    |||||| | |||||| ||| |||||||||||||||| | |||||||||||||||||||  |||| ||||||||  ||||| ||||||||| ||||||||    
T  36362037 catagacacccttaggtggtaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttctct 36362135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 469 - 599
Target Start/End: Complemental strand, 16374894 - 16374764
Alignment:
Q  469 caatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaata 568  Q
    |||||||||| |||||||| |||||||||||||||||||  |||| |||| | |  ||||| |||| |||| |||  |||| | |||| ||||||||||     
T  16374894 caatacatcccttgacatccacacaaaaatctgacacgtggtcacgtggatctcacacaagcacacattctctttcatctctttttctctcttcctaatg 16374795  T
Q  569 tatagaatgtacaagggtgtatgacaataaa 599  Q
    ||| || ||||||| ||||||||| ||||||    
T  16374794 tatggagtgtacaaaggtgtatgagaataaa 16374764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 511 - 601
Target Start/End: Original strand, 31735949 - 31736039
Alignment:
Q  511 cacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
    |||||||| |||| ||||| ||||||||| ||||||||| |||||| |||||||||| ||| |  ||||||||||||||||  ||||||||    
T  31735949 cacatggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaaag 31736039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 591
Target Start/End: Complemental strand, 40846195 - 40846061
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| |||||||||| || |||||||| |||||||||||| ||| ||  | | |||||||||| |||| |||||||||| |||  |||  ||||||    
T  40846195 atccttaggtggcaatacaccccttgacatccacacaaaaatctaacatgtagttatatggaccccgcacaaatacactttctctttcttcttctcttct 40846096  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     ||||||||| | ||   |||||||||||||||||    
T  40846095 ctcttcctaaaagatgagatgtacaagggtgtatg 40846061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 499 - 607
Target Start/End: Original strand, 11044238 - 11044347
Alignment:
Q  499 ctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatgacaataa 598  Q
    |||||||||  |||| ||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||  ||    ||||||| ||||||||| |||||    
T  11044238 ctgacacgtagtcacgtggaccccgcacaagtacactttctctttcctctcatcttctctcttcctaatgcatgaggtgtacaaaggtgtatgaaaataa 11044337  T
Q  599 a-agtgtcta 607  Q
    | ||||||||    
T  11044338 agagtgtcta 11044347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 459 - 591
Target Start/End: Original strand, 7727926 - 7728058
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| ||| |||||| |  |||||||  ||| |||||||||||| ||  ||| |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  7727926 ccttaggtggtaatacacctcttgacattcacataaaaatctgacatgtggtcatatggaccccgcacaagtacactttctgtttcttcttctcttctct 7728025  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||| |  ||||||||| ||||||    
T  7728026 cttcctaatatatggggtgtacaaggatgtatg 7728058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 457 - 571
Target Start/End: Original strand, 45223060 - 45223174
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| ||||||||||| |||  ||||||||||||||||||||||||| |||| ||  ||| | ||||||  || ||||| |||  |||||||||||    
T  45223060 atccttaggtggcaatacattcttgaacatctacacaaaaatctgacacgtaatcatattaacctcatacaagcgcattttctctttcatctcatcttct 45223159  T
Q  557 ttcttcctaatatat 571  Q
     |||| | |||||||    
T  45223160 ctctttcaaatatat 45223174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 563
Target Start/End: Original strand, 3694387 - 3694491
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| || ||||||| | ||| ||| | |||||||||||||||||||  |||  |||| |||| ||||| ||||||||| ||||||||| |||||| |    
T  3694387 ccttaggtgacaatacaccttttaacacccacacaaaaatctgacacgtagtcatgtggatcccgcacaagcacactttctcttttctctcctcttctct 3694486  T
Q  559 cttcc 563  Q
    |||||    
T  3694487 cttcc 3694491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 591
Target Start/End: Complemental strand, 32564505 - 32564374
Alignment:
Q  460 cttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttc 559  Q
    ||||| |||||||||| || |||||| | |||||||||||||||| ||    | |||||||||| |||| |||||||||| |||  |||  |||||| ||    
T  32564505 cttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggctatatggaccccgcacaaatacactttctctttcttcttctcttctctc 32564406  T
Q  560 ttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||| ||    ||||||||||||||||    
T  32564405 ttcctaatacatgaggtgtacaagggtgtatg 32564374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 529
Target Start/End: Complemental strand, 46374891 - 46374812
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaag 529  Q
    |||||| |||||||| |||||| ||| ||||| ||| | |||||||||||||||||||   ||||||||||||| |||||    
T  46374891 catagacatccttaggtggcaacacaccctttaacacccacacaaaaatctgacacgtggccacatggaccccgcacaag 46374812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 591
Target Start/End: Original strand, 32045891 - 32045989
Alignment:
Q  493 aaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||||||||||| | || || |||||| ||| || | |||||||||||  ||||||||||| |||| | |||||||   |||||||||||||||||    
T  32045891 aaaaatctgacacgtaaccatatagaccccatactagcatactttctttttcatctcatcttctctctttcaaatatatgagatgtacaagggtgtatg 32045989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 18207191 - 18207339
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| |  |||||| | | |||||||||| ||||||   ||| || |||||  ||||| ||||||||| |||  ||||    
T  18207191 catagacaaccttaggtggcaatacacctcttgacacccatacaaaaatctaacacgtgg-cacgtgaaccccacacaagcacactttctctttcatctc 18207289  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| |||||||| |  ||||| ||||||||||||||||| ||||||    
T  18207290 ctcttctctcttcctagtggatagagtgtacaagggtgtatgataataaa 18207339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 565
Target Start/End: Complemental strand, 35468944 - 35468829
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||||||||||||||||||||| ||||||| | ||| |||||||| | | || | ||  ||||||| | ||||  ||||||||| ||| || ||    
T  35468944 catagacatccttagatggcaatacatcatttgacacccacataaaaatctaatatgtgaccatgtggaccctgcacaaacacactttctctttcctatc 35468845  T
Q  550 atcttctttcttccta 565  Q
     |||||| ||||||||    
T  35468844 ctcttctctcttccta 35468829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 599
Target Start/End: Complemental strand, 39256012 - 39255864
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| |  |||| | | | |||||||||||||||||   ||| ||||| ||  ||||| ||||||||| |||  ||||    
T  39256012 catagacaaccttaggtggcaatacaccacttgatacccatacaaaaatctgacacgtgg-cacgtggactccacacaagaacactttctctttcatctc 39255914  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| ||||||   |  ||||||||||||||||||||||| ||||||    
T  39255913 ctcttctctcttcccggtggatagaatgtacaagggtgtatgataataaa 39255864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 41423693 - 41423842
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||| |||||||| |||||| |  ||||||  ||||||||||||||||| ||  |||| | || |||||||||| | | ||||| |||  ||||    
T  41423693 catagacatcattagatggtaatacacctcttgacacttacacaaaaatctgacatgtggtcacgtagatcccgtacaagcatattttctctttcatctc 41423792  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||||| |||||||| |  || |  ||||||| ||||||||| ||||||    
T  41423793 ctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaa 41423842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 30915474 - 30915615
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||  | ||| |||||||||||||||  |||| ||||||||||||||| ||||||||| |||||||||    
T  30915474 catagacacccttaggtggcaatacaccctttgacccccacataaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctc 30915573  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||| ||||||||||| || |  ||||||||||||||||    
T  30915574 atcttctctcttcctaatacatggggtgtacaagggtgtatg 30915615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 40613991 - 40613850
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||| |||||||||| ||||||||| | |||||||||||||||||||   ||||||||||||| ||||| ||||||||| |||||||||    
T  40613991 catagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacactttctcttttctctc 40613892  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     | |||||||||| |||| ||| |  ||||||||||||||||    
T  40613891 ctattctttcttcataatgtatggggtgtacaagggtgtatg 40613850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 28381744 - 28381603
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | || |||| | |||||||||||||||||||  |||||||||| ||| ||||| ||||||||| |||||||||    
T  28381744 catagacacccttaggtggcaatacacctttcgacacccacacaaaaatctgacacgtagtcacatggactccgcacaagcacactttctcttttctctc 28381645  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||||||| |||||||||||||| |  ||||||||| ||||||    
T  28381644 atcttctctcttcctaatatatggggtgtacaaggatgtatg 28381603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 450 - 590
Target Start/End: Original strand, 42257204 - 42257344
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||| |||| |||||||||||| ||||||| | ||| |||||||||||||||   ||||||||||||| ||||| ||||||||| |||||||||    
T  42257204 catagacatctttaggtggcaatacatcatttgacacccacataaaaatctgacacgtggccacatggaccccgcacaagcacactttctcttttctctc 42257303  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtat 590  Q
     ||||||||||||||||| ||| |  |||||||| ||||||    
T  42257304 ctcttctttcttcctaatgtatggggtgtacaagagtgtat 42257344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 450 - 601
Target Start/End: Complemental strand, 33436189 - 33436038
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||| ||||||  |||| ||||||||| ||||| ||||||||| ||| |||||    
T  33436189 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctc 33436090  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
    ||||||| ||||||||||  ||    ||||||||||||||||| ||||||||    
T  33436089 atcttctctcttcctaatgcatgaggtgtacaagggtgtatgagaataaaag 33436038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 13438354 - 13438471
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| || ||||||||||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  13438354 catagacacccttaggtgacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 13438453  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  13438454 ctcttctctcttcctaat 13438471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 17473031 - 17473148
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | ||||||||||||||||| ||||||||| | |||||||||||||||||||  |||| |||| |||| ||||| ||||||||| |||||||||    
T  17473031 catagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctc 17473130  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  17473131 ctcttctctcttcctaat 17473148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 450 - 601
Target Start/End: Original strand, 4060696 - 4060847
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| || ||||||| | ||||||||| |||||||||||||||||||  | || |||| |||| | ||| |||||||||||||||||||    
T  4060696 catagacacccttaggtgacaatacaccttttgacatccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttcttttttctctc 4060795  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
    ||||||| ||||||||||  || |  ||||||||||||||||  ||||||||    
T  4060796 atcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaag 4060847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 450 - 601
Target Start/End: Complemental strand, 19930909 - 19930758
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||||| |||||||||||||||||||  |||  ||||||||| ||||  ||||||||| |||||||||    
T  19930909 catagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaacacactttctcttttctctc 19930810  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
     |||||| ||||||||||  ||    ||||||||||||||||  ||||||||    
T  19930809 ctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaaag 19930758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 450 - 601
Target Start/End: Original strand, 40701489 - 40701640
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| | ||||||| | |||||||||||||||||||  | || ||||||||| ||||  ||||||||| |||||||||    
T  40701489 catagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacactttctcttttctctc 40701588  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaag 601  Q
    ||||||| ||||||||||  || |  ||||||||||||||||  ||||||||    
T  40701589 atcttctctcttcctaatgcatcgggtgtacaagggtgtatggaaataaaag 40701640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 450 - 607
Target Start/End: Complemental strand, 32505737 - 32505579
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| || ||||||| | ||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  32505737 catagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctattttctctc 32505638  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa-agtgtcta 607  Q
     |||||| ||||| ||||  || |  ||||||||||||||||| |||||| ||||||||    
T  32505637 ctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagagtgtcta 32505579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 7465824 - 7465707
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | ||||||||||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||  ||||| ||||||||| |||| ||||    
T  7465824 catagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttatctc 7465725  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  7465724 ttcttctctcttcctaat 7465707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 9058491 - 9058608
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||  ||||||||| ||||| ||||||||| |||||||||    
T  9058491 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 9058590  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  9058591 ctcttctctcttcctaat 9058608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 599
Target Start/End: Complemental strand, 10249471 - 10249322
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| || ||||||| | ||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||    
T  10249471 catagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 10249372  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     |||| | ||||||||||  || |  ||||||||||||||||| ||||||    
T  10249371 ctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 10249322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 28863466 - 28863583
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| | |||||| |||||||||| ||||||||| | |||||||||||||||||||  |||| ||||||||| ||||| ||||||||| |||| ||||    
T  28863466 catagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttatctc 28863565  T
Q  550 atcttctttcttcctaat 567  Q
     |||||| ||||||||||    
T  28863566 ctcttctctcttcctaat 28863583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 36168847 - 36168996
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||||||||||| ||||||||||||| ||  | |||||||||| ||||||||   ||||||||||||| ||||| | ||||||| |||||||||    
T  36168847 catagacatccttagatgacaatacatcctttaactcccacacaaaaatttgacacgtggccacatggaccccgcacaagcatactttctcttttctctc 36168946  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaa 599  Q
     | |||| |||||||||| ||| |  |||||||| |||||||| ||||||    
T  36168947 ctattctctcttcctaatgtatggggtgtacaagagtgtatgagaataaa 36168996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 2533135 - 2533275
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||  |||||||||||||||||||| | |||||||||||||||||||   ||||| ||||||| ||||| ||||||| | |||| ||||    
T  2533135 catagacatccttaagtggcaatacatcctttgacacc-acacaaaaatctgacacgtagccacatagaccccgcacaagcacactttttcttttatctc 2533233  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||| ||| ||| |  ||||||||||||||||    
T  2533234 ctcttctctcttcccaatgtatggggtgtacaagggtgtatg 2533275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 591
Target Start/End: Original strand, 20700826 - 20700967
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| |||||||  |||||||||| ||||||||  |||||||||||||||||||||  |||| ||||||||| | ||| ||||||||| ||| |||||    
T  20700826 catagacatccttatgtggcaatacaccctttgactcctacacaaaaatctgacacgtagtcacgtggaccccgcataagcacactttctctttcctctc 20700925  T
Q  550 atcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     |||||| |||||||| |  || |  ||||||||||||||||    
T  20700926 ctcttctctcttcctagtgcatggggtgtacaagggtgtatg 20700967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 567
Target Start/End: Complemental strand, 38273231 - 38273114
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| || |||||||||||||||| ||||| ||| | |||||||||||||||||||   ||||||||||||| || || ||||||||| |||||||||    
T  38273231 catagacattcttagatggcaatacaccctttaacacccacacaaaaatctgacacgtagccacatggaccccgcactagcacactttctcttttctctc 38273132  T
Q  550 atcttctttcttcctaat 567  Q
     | |||| ||||||||||    
T  38273131 ctattctctcttcctaat 38273114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 457 - 591
Target Start/End: Complemental strand, 45097817 - 45097683
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttct 556  Q
    |||||||| ||||||||||||| |||||| | | |||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  ||||||    
T  45097817 atccttaggtggcaatacatcccttgacacccatacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttct 45097718  T
Q  557 ttcttcctaatatatagaatgtacaagggtgtatg 591  Q
     ||||||||||| || | ||||||||| |||||||    
T  45097717 ctcttcctaatacatcggatgtacaagagtgtatg 45097683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 587
Target Start/End: Original strand, 13365373 - 13365501
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    ||||||||||||||| | || |||||| | |||||||||||||||| || | || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  13365373 ccttagatggcaatataccccttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacactttctctttcttcttctcttctct 13365472  T
Q  559 cttcctaatatatagaatgtacaagggtg 587  Q
    |||||||||| || |  ||||||||||||    
T  13365473 cttcctaatacatggggtgtacaagggtg 13365501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 469 - 591
Target Start/End: Original strand, 38732384 - 38732506
Alignment:
Q  469 caatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaata 568  Q
    |||||||||| |||||| | |||||||||||||||| ||  ||| |||||||||| ||||||||||||||| |||  |||  |||||| |||||||||||    
T  38732384 caatacatcccttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacactttctctttcttcttctcttctctcttcctaata 38732483  T
Q  569 tatagaatgtacaagggtgtatg 591  Q
     ||   |||||||||| ||||||    
T  38732484 catgagatgtacaaggatgtatg 38732506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 459 - 617
Target Start/End: Complemental strand, 2997567 - 2997408
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||||| |||  |||  |||||| |    
T  2997567 ccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctct 2997468  T
Q  559 cttcctaatatatagaatgtacaagggtgtatgacaat--aaaagtgtctaggcaacattt 617  Q
    |||||||||| ||    |||||||||||||||| ||||  ||||||||||| | |||||||    
T  2997467 cttcctaatacatgaggtgtacaagggtgtatg-caattaaaaagtgtctatgtaacattt 2997408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 466 - 539
Target Start/End: Original strand, 27864731 - 27864804
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttct 539  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| | ||| |||||||||    
T  27864731 tggcaatacaccctttgacatccacacaaaaatctgacacgtaatcacgtggaccccgcaaaagcacactttct 27864804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 489 - 597
Target Start/End: Original strand, 3737993 - 3738101
Alignment:
Q  489 acacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgt 588  Q
    |||||||||||||||| ||  |||  ||||||||| ||||| ||| ||||||||| ||||| |||||||||||||||  ||||||  ||||||| |||||    
T  3737993 acacaaaaatctgacatgtggtcatgtggaccccgcacaagcacattttctttttcctctcctcttctttcttcctagaatatagggtgtacaaaggtgt 3738092  T
Q  589 atgacaata 597  Q
    |||| ||||    
T  3738093 atgaaaata 3738101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 459 - 591
Target Start/End: Original strand, 43490141 - 43490273
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| || ||||||| || |||||| | |||||||||||||||| ||   || |||||||||| ||||||||||||| | |||  |||  |||||| |    
T  43490141 ccttaggtgacaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttatctttcttcttctcttctct 43490240  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||||| ||||  ||||||||||||||||    
T  43490241 cttcctaatacatagggtgtacaagggtgtatg 43490273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 38882902 - 38882759
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatgga---ccccgtacaagtacactttcttttttct 546  Q
    |||||| | |||||| |||||||| | ||||||||||| |||||||||||||||||||  |||| ||||   ||||| |||||  |||||||| ||||||    
T  38882902 catagacacccttaggtggcaata-accctttgacatccacacaaaaatctgacacgtagtcacgtggacccccccgcacaagcgcactttctcttttct 38882804  T
Q  547 ctcatcttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    || ||||| | ||||||||||  || |  ||||||||||||||||    
T  38882803 cttatcttatctcttcctaatgcatggggtgtacaagggtgtatg 38882759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 548
Target Start/End: Complemental strand, 5574567 - 5574479
Alignment:
Q  460 cttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctct 548  Q
    ||||| |||||||||| ||||||||| | ||| |||||||||||||||  |||| |||| |||| ||||| ||||||||| ||||||||    
T  5574567 cttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctct 5574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 457 - 591
Target Start/End: Original strand, 17823802 - 17823940
Alignment:
Q  457 atccttagatggcaatacatcctttgacatctacacaaaaatctgacacgt---tatc-acatggaccccgtacaagtacactttcttttttctctcatc 552  Q
    |||||||| ||||||||||| | |  ||| | |||||||||||||||||||   |||  | ||||||||| |||||| ||||||||| |||  |||||||    
T  17823802 atccttaggtggcaatacattcctgaacacccacacaaaaatctgacacgtaactatatatatggaccccatacaagcacactttctctttcatctcatc 17823901  T
Q  553 ttctttcttcctaatatatagaatgtacaagggtgtatg 591  Q
    |||| |||||| ||||||| |  ||||||||||||||||    
T  17823902 ttctctcttccaaatatatggggtgtacaagggtgtatg 17823940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 459 - 570
Target Start/End: Complemental strand, 26891584 - 26891473
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| |||||||||| || | |||| | |||||||||||||||| ||  |||| |||||| || ||||| ||| ||||| ||| ||||  |||||| |    
T  26891584 ccttaggtggcaatacacccctagacacccacacaaaaatctgacatgtggtcacgtggacctcgaacaagcacattttctctttcctcttctcttctct 26891485  T
Q  559 cttcctaatata 570  Q
    ||||||||||||    
T  26891484 cttcctaatata 26891473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 565
Target Start/End: Original strand, 33436222 - 33436337
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctc 549  Q
    |||||| ||||||||||||||||||| | ||||||| | ||| ||||||||||||||| | ||  |||||   | ||||| ||||||||| ||| || ||    
T  33436222 catagacatccttagatggcaatacaccttttgacacccacataaaaatctgacacgtgaccatgtggactttgcacaagcacactttctctttcctatc 33436321  T
Q  550 atcttctttcttccta 565  Q
     |||||| ||||||||    
T  33436322 ctcttctctcttccta 33436337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 591
Target Start/End: Original strand, 3439999 - 3440131
Alignment:
Q  459 ccttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttcttt 558  Q
    |||||| ||||||||||  | | |||| | |||||||||||| ||| || || || ||||||||| ||||| ||| ||||| ||| ||||| |||||| |    
T  3439999 ccttaggtggcaatacactcctggacacccacacaaaaatctaacatgtgattacgtggaccccgcacaagcacattttctctttcctctcctcttctct 3440098  T
Q  559 cttcctaatatatagaatgtacaagggtgtatg 591  Q
    ||| |||  ||||||  ||||||| ||||||||    
T  3440099 ctttctagaatatagggtgtacaaaggtgtatg 3440131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 618
Target Start/End: Original strand, 41758683 - 41758767
Alignment:
Q  535 tttcttttttctctcatcttctttcttcctaatatatagaatgtacaagggtgtatgacaataaaa-gtgtctaggcaacatttt 618  Q
    ||||| |||| |||| |||||| |||||||||||||| |  ||||||||| ||||||| ||||||| ||||||| | ||||||||    
T  41758683 tttctcttttatctcctcttctctcttcctaatatatggggtgtacaaggatgtatgagaataaaatgtgtctatgtaacatttt 41758767  T

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Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 568
Target Start/End: Complemental strand, 3035033 - 3034954
Alignment:
Q  489 acacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaata 568  Q
    |||||||||||||||| ||  ||| |||||||||| ||||||| ||||||| |||  |||  |||||| |||||||||||    
T  3035033 acacaaaaatctgacatgtggtcatatggaccccgcacaagtatactttctctttcttcttctcttctctcttcctaata 3034954  T

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Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 41575148 - 41575202
Alignment:
Q  450 catagatatccttagatggcaatacatcctttgacatctacacaaaaatctgaca 504  Q
    |||||| |||||||||||| |||||| ||||||||||  |||||||||| |||||    
T  41575148 catagacatccttagatggtaatacaccctttgacattcacacaaaaatttgaca 41575202  T

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Target: scaffold0110 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 479 - 618
Target Start/End: Complemental strand, 8923 - 8783
Alignment:
Q  479 tttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttcctaatatatagaatgt 578  Q
    |||||||||||||||||||| |||||| |  |||| ||||||||  ||||||||| ||||| ||| ||| |||||||| |||||||||||||| |  |||    
T  8923 tttgacatctacacaaaaatttgacacatagtcacgtggaccccacacaagtacattttctctttcctcccatcttctctcttcctaatatatggggtgt 8824  T
Q  579 acaagggtgtatgacaataaaa-gtgtctaggcaacatttt 618  Q
    |||||||||||| | ||||||| ||||||| | ||||||||    
T  8823 acaagggtgtataagaataaaaggtgtctatgtaacatttt 8783  T

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Target: scaffold0237 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 461 - 591
Target Start/End: Original strand, 4051 - 4181
Alignment:
Q  461 ttagatggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttct 560  Q
    ||||||||||||||| | ||| ||| | |||||||||||||||||||  | || |||| |||| | ||| ||||||||| ||||||||  |||||| |||    
T  4051 ttagatggcaatacaccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttctcttttctcttctcttctctct 4150  T
Q  561 tcctaatatatagaatgtacaagggtgtatg 591  Q
    |||||||  || |  ||||||||||||||||    
T  4151 tcctaatgcatggggtgtacaagggtgtatg 4181  T

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Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 591
Target Start/End: Original strand, 152525 - 152650
Alignment:
Q  466 tggcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctctcatcttctttcttccta 565  Q
    |||||||||| || |||||| | |||||||||||||||| ||  ||| ||||| |||| |||| |||||||||| |||  |||  |||||| |||| |||    
T  152525 tggcaatacaccccttgacacccacacaaaaatctgacatgtggtcatatggatcccgcacaaatacactttctctttcttcttctcttctctctttcta 152624  T
Q  566 atatatagaatgtacaagggtgtatg 591  Q
    ||| || | |||||||||||||||||    
T  152625 atacatgggatgtacaagggtgtatg 152650  T

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Target: scaffold0316 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 548
Target Start/End: Original strand, 17083 - 17163
Alignment:
Q  468 gcaatacatcctttgacatctacacaaaaatctgacacgttatcacatggaccccgtacaagtacactttcttttttctct 548  Q
    ||||||||||| | |||||| |||||||||||||||| ||  |||||||||||||| ||||| ||| ||||| ||| ||||    
T  17083 gcaatacatccctcgacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctctttcctct 17163  T

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