View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_23 (Length: 345)
Name: NF15999_low_23
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 33 - 340
Target Start/End: Original strand, 26413957 - 26414264
Alignment:
| Q |
33 |
aatggaaagaatattgggcattggcttgccatcatctttggaattggaggaacaaagagaagcatcaagaaacaaattcagacttgaggattatcgtatg |
132 |
Q |
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| T |
26413957 |
aatggaaagaatattgggcattggcttgccatcatctttggaattggaggaacagagagaagcatcaagaaaaaaattcagacttgaggattatcgtatg |
26414056 |
T |
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| Q |
133 |
gcacaggctgcaggttctataattagctatggacatagcagcagattcggattgtctgggatctgcctaaaacgcgatatgggttaaattagtcaccggt |
232 |
Q |
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| T |
26414057 |
gcacaggctgcaggttctataattagctatggacatagcagcagattcggattgtctgggatctgcctaaagcgcgatataggttaaattagtcaccggt |
26414156 |
T |
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| Q |
233 |
ggggctagcagaggctatgaaccaatcaatacattgtacaccccaaacatatcagctacgaacgaaaatgaaaatcatctgcattaatttaacacagtat |
332 |
Q |
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| T |
26414157 |
ggggctagcagaggctatgaaccaatcaatacattgtacaccccaaacatatgagctacgaaccaaaatgaaaatcatctgcattaatttaacacagtat |
26414256 |
T |
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| Q |
333 |
catagttc |
340 |
Q |
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|||||||| |
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| T |
26414257 |
catagttc |
26414264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 1536556 - 1536608
Alignment:
| Q |
52 |
attggcttgccatcatctttggaattggaggaacaaagagaagcatcaagaaa |
104 |
Q |
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| T |
1536556 |
attggcttgccatcatctttggaattggaggaacaaagagaattatcaagaaa |
1536608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 1536650 - 1536743
Alignment:
| Q |
111 |
cagacttgaggattatcgtatggcacaggctgcaggttctataattagctatggacata-gcagcagattcggattgtctgggatctgcctaaa |
203 |
Q |
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| T |
1536650 |
cagacttgaggattattatatggcacaggcggcaggttccataattagctacagacataggcagcctattcgaattgattgggatccgcctaaa |
1536743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 27986795 - 27986729
Alignment:
| Q |
252 |
aaccaatcaatacattgtacaccccaaacatatcagctacgaacgaaaatgaaaatcatctgcatta |
318 |
Q |
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| T |
27986795 |
aaccaatcaatacattgtacgcaacaaacagatcagctaagaaccaaaatgaaaatcatttgcatta |
27986729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 28073327 - 28073261
Alignment:
| Q |
252 |
aaccaatcaatacattgtacaccccaaacatatcagctacgaacgaaaatgaaaatcatctgcatta |
318 |
Q |
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|||||||||||||||||||| | |||||| |||||||| |||| |||||||||||||| ||||||| |
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| T |
28073327 |
aaccaatcaatacattgtacgcaacaaacagatcagctaagaaccaaaatgaaaatcatttgcatta |
28073261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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