View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_27 (Length: 316)
Name: NF15999_low_27
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 53565233 - 53565513
Alignment:
| Q |
18 |
ggtccaaccattccaagcatccatgttcatcggaaaccttacgctgtggtgttgtcaagttgaatggaccaacatttagtagcaatttgaactttgaatt |
117 |
Q |
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| T |
53565233 |
ggtccaaccattctaagcatccatgttcatcggaaaccttacgctgtggtgttgtcaagttgaatggaccaacatttagtagcaatttgaactttgaatt |
53565332 |
T |
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| Q |
118 |
taactcattctcaatcagagggtgtattgtagcaaatgagtttatggcaactgcattcgctcgtggtaactctagtcccattttgtgtaacattgttgca |
217 |
Q |
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| T |
53565333 |
taactcattctcaataagagggtgtattgtagcaaatgagtttatggcaactgcattcgctcgtggtaactctagtcccattttgtgtaacattgttgca |
53565432 |
T |
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| Q |
218 |
aatggtacatctatatcttttattactccctcaggcaaatcagaagcctttagctcgggaaaaccaggaagaacatcgata |
298 |
Q |
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| T |
53565433 |
aatggtacatctatatcttttattactccctcaggcaaatcagaagcctttagctcgggaaaaccaggaagaacatcgata |
53565513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 53580027 - 53580293
Alignment:
| Q |
22 |
caaccattccaagcatccatgttcatcggaaaccttacgctgtggtgttgtcaagttgaatggaccaacatttagtagcaatttgaactttgaatttaac |
121 |
Q |
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| T |
53580027 |
caaccatgctaaacatccatgttcatcagaaaccatacgttgcggtgttgtcaagatgaatggaccaacatttagtagcaatttgaactgggaatttaac |
53580126 |
T |
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| Q |
122 |
tcattctcaatcagagggtgtattgtagcaaatgagtttatggcaactgcattcgctcgtggtaactctagtcccattttgtgtaacattgttgcaaatg |
221 |
Q |
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| T |
53580127 |
tcattctcaataagagggtgtaccgtagaaaatgagtttatggcaactgcagttgctcgtggtaactctagtcccattttgtgtaacattgttgaaaatg |
53580226 |
T |
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| Q |
222 |
gtacatctatatcttttattactccctcaggcaaatcagaagcctttagctcgggaaaaccaggaag |
288 |
Q |
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| T |
53580227 |
gtccatctatatcacctatcactccttcaggaaaatcagaaacatgaagctcaggaaaaccaggaag |
53580293 |
T |
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