View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_28 (Length: 304)
Name: NF15999_low_28
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 32416426 - 32416605
Alignment:
| Q |
18 |
acaaggacatactcttagaaggacacccttcagttgttgttgcgattgaagagagggaagaattatgtatgatattgtttttcctacacttgacaagcat |
117 |
Q |
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| T |
32416426 |
acaaggacatactcttagaaggacacccttcagttgttgttgcgattgaagagagggaagagttatgtatgatattgtttttcctacacttgacaagcat |
32416525 |
T |
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| Q |
118 |
tctatatatgattgagactgtagatatgcaacctcagtttgacaatattgtgttggcttccacaactgttatattccctc |
197 |
Q |
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| T |
32416526 |
tctatatatgattgagactgtagatatgcaacctcagtttgacaacattgtgttggcttccacaactgttatattccctc |
32416605 |
T |
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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 32417412 - 32417500
Alignment:
| Q |
211 |
tgtttctaagagacctagaatgtcagaacagcaattgtcttgtgattgaacagaaggaagagttgtgatattgttattcctaatctgtg |
299 |
Q |
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| T |
32417412 |
tgtttctaagacacgtcgaatgtcagaacagcaattttcttgtgattgaacaaaaggaagagttgtgatattgttattcctaatatgtg |
32417500 |
T |
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