View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_3 (Length: 614)
Name: NF15999_low_3
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 17 - 599
Target Start/End: Complemental strand, 8840440 - 8839855
Alignment:
| Q |
17 |
acatctcccccacaatcttactcatacaaacaatcgcctcatcaggataaccaggaaaattcgtttcgaattcttctggttgatcctgatgatctgattg |
116 |
Q |
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| T |
8840440 |
acatctcccccacaatcttgctcatacaaacaatcgcctcatcaggataaccaggaaaattcgtttcgaattcttctggttgatcctgatgatctgattg |
8840341 |
T |
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| Q |
117 |
cccgtcctgttgatctgacgccactt---ttcgttttgcatcaaccttttcattgatattgatatcaggattcacttcggtctggattctagaatattct |
213 |
Q |
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| T |
8840340 |
cccgtcctgttgatccgacaccacttgttttcgttttgcatcaaccttttcattgatattgatatcaggattcacttcggtctggattctagaatattct |
8840241 |
T |
|
| Q |
214 |
atcaacacgcgaaaatcttcttccaaaaacgccatcgctttctgttgaattttaccaacacgattggctgttgactttcttctttcatctatggtttctt |
313 |
Q |
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| T |
8840240 |
atcaacacgcgaaaatcttcttccaaaaacgccatcgctttctgttgaattgtaccaacacgattggctattgactttcttctttcatctatggtttctt |
8840141 |
T |
|
| Q |
314 |
tttcatcatgaatcatcaacattttcttaagcttcgaaattcgatgcacagattcaagcaaccatttatctttctccataatctcttcccattttccttt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840140 |
tttcatcatgaatcatcaacattttcttaagcttcgaaattcgatgcacagattcaagcaaccatttatctttctccataatctcttcccattttccttt |
8840041 |
T |
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| Q |
414 |
ccgttctccagtttcattcttcaccatattctcctccacctgatccaaaaacttctctatgtaaccaggaatctcaaacgacactccttctttctcatga |
513 |
Q |
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| T |
8840040 |
ccgttctccagtttcattcttcaccatattctcctccacctgatccaaaaacttctctatgtaaccaggaatctcaaacgacactccttctttctcatgc |
8839941 |
T |
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| Q |
514 |
agaagaaaatgatcaatgtcttctgaaaccttctcacagataggaggagacttcacagcctcaatggtttctgcatttccttcctt |
599 |
Q |
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| T |
8839940 |
agaagaaaatgatcaatgtcttctgaaaccttctcacagatagggggagacttcacagcctcaatggtttctgcatttccttcctt |
8839855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 548
Target Start/End: Original strand, 10627062 - 10627094
Alignment:
| Q |
516 |
aagaaaatgatcaatgtcttctgaaaccttctc |
548 |
Q |
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| T |
10627062 |
aagaaattgatcaatgtcttctgaaaccttctc |
10627094 |
T |
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