View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_31 (Length: 283)
Name: NF15999_low_31
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 1104352 - 1104084
Alignment:
| Q |
1 |
taaggtccacaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcgttgacgct |
100 |
Q |
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| T |
1104352 |
taaggtccacaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcgttgacgct |
1104253 |
T |
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| Q |
101 |
tctcaagtgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttc |
200 |
Q |
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| T |
1104252 |
tctcaagtgtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaattttgtttc |
1104153 |
T |
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| Q |
201 |
gacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
269 |
Q |
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| T |
1104152 |
gacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
1104084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 108 - 257
Target Start/End: Complemental strand, 1087692 - 1087540
Alignment:
| Q |
108 |
tgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttg---tttcgaca |
204 |
Q |
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| T |
1087692 |
tgtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaaca |
1087593 |
T |
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| Q |
205 |
atttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaagg |
257 |
Q |
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| T |
1087592 |
attgaagtaacaatctccacaggtgctccactaaatccaactccattccaagg |
1087540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 1047319 - 1047054
Alignment:
| Q |
7 |
ccacaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcgttgacgcttctcaa |
106 |
Q |
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|||||| |||||||| |||||||||||||| |||||||| |||| | | |||||| ||| || |||||| ||||| ||||||||| | || |
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| T |
1047319 |
ccacaatgattatagacatcacaatcatcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaa |
1047220 |
T |
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| Q |
107 |
gtgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca-- |
204 |
Q |
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| T |
1047219 |
gcgtttggttcaaataagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaac |
1047120 |
T |
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| Q |
205 |
atttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
269 |
Q |
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| T |
1047119 |
agttgatgtaacaatctccataggcgctccactaaatccaactccattccaaggaccactcctatg |
1047054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 266
Target Start/End: Complemental strand, 1072030 - 1071870
Alignment:
| Q |
109 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--at |
206 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||| ||||| |||| | | | | |
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| T |
1072030 |
gtttggttcaaataagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggtgttgtagctataacac |
1071931 |
T |
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| Q |
207 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcct |
266 |
Q |
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| T |
1071930 |
ttgacgtaataatctccataggtgctccactaaatccaactccattccaaggaccactcct |
1071870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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