View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15999_low_33 (Length: 256)
Name: NF15999_low_33
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 18422227 - 18421977
Alignment:
| Q |
1 |
ctgtttcgtcttcaatataaggtttggacttggagtaatgtcaataacaccgtttcc------ctgagcccacatccgcagacaaactctgccttgcata |
94 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18422227 |
ctgtttcgtcttcaatatgagtttgggacttggagtaatgtcgataacaccgtttccgaacttctgagcccacatccgcatacaaactctgccttgcata |
18422128 |
T |
|
| Q |
95 |
ttgagcaaatctttgtcccaaaccattcaataaaacagacttatgatgtgaaaaa-atgttaccatctgggacgatat-atatggccacctatcaccatt |
192 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18422127 |
tcgagcaaatctttgtcccaaaccattcaataaaacagacttatgatgtgaaaaagatgtgaccatctgggacgatatggccaggccacctatcaccatt |
18422028 |
T |
|
| Q |
193 |
ttgtccaccactacgaccaccatcaatcactactttgaccaccgttgatct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18422027 |
ttgtccaccactacgaccaccatcaatcactactttgaccaccgttgatct |
18421977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 18435737 - 18435492
Alignment:
| Q |
2 |
tgtttcgtcttcaatataaggtttggacttggagtaatgtcaataacaccgtttccc------tgagcccacatccgcagacaaactctgccttgcatat |
95 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18435737 |
tgtttcatcttcaatataagttttggacttggagtaacgtcgatcacaccgtttccaaacttttgagcccacatccgcatacaaactctgccttgcatat |
18435638 |
T |
|
| Q |
96 |
tgagcaaatctttgtcccaaaccattcaataaaacagacttatgatgtgaaaaa-atgttaccatctgggacgatatatatggccacctatcaccatttt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
18435637 |
tgagcaaatctttgtcccaaaccattcaataaaacagacttatcatgtgaaaaagatgtgaccatctgggacg----atatgaccacctatcaccatttt |
18435542 |
T |
|
| Q |
195 |
gtccaccactacgaccaccatcaatcactactttgaccaccgttgatctct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
18435541 |
gtccaccactacgaccaccatcaatcactac-ttgaccaatgttgatctct |
18435492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University