View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_35 (Length: 249)
Name: NF15999_low_35
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 25378151 - 25378387
Alignment:
| Q |
13 |
cataggtcaattctaacttaactaaagtttaacaaccatttcggtctcacaaaatctgagaaagttgtacgtaaaagatttagctgttcatttaagtctc |
112 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| |||||||||||||||| |
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| T |
25378151 |
cataggttaattctaacttaactaaagtttaacaaccatttcggtctcacaaaatccgagaaaattatacgtaaaagatttagttgttcatttaagtctc |
25378250 |
T |
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| Q |
113 |
aaaatcagagatgttggtattcaaaattgcacgcgaaagatatcaaatttagaaaaagtaacaataacactaacataacaaaatgttgcataatttcatg |
212 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25378251 |
aaaatcagagatgtaggtattcaaagttgcacgcgaaagatatcaaatttaaaaaaagtaacaataacactaaaataacaaaatgttgcataatttcatg |
25378350 |
T |
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| Q |
213 |
caaagtccaaacccataggacaaaacaaacaaaccat |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
25378351 |
caaagtccaaacccataggacaaaacaaacaaaccat |
25378387 |
T |
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