View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_4 (Length: 586)
Name: NF15999_low_4
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 207 - 569
Target Start/End: Original strand, 25378559 - 25378921
Alignment:
| Q |
207 |
aaatgatagattcatcattttagaatcaccagcagcagcactaataaaactgagcagaagaaaccaactccaacaaatccatctctctcttcccctctga |
306 |
Q |
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| T |
25378559 |
aaatgatagattcatcattttagaatcaccagcagcagcactaataaaactgagcagaagaaaccaactccaacaaatccatctctctcttcccctctga |
25378658 |
T |
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| Q |
307 |
aaaattcatattcccaagatgcaactcaacgttgttctgattctgaattccattcagcattggaggaaggtagtggtcagaattaaggtaattcatcata |
406 |
Q |
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| T |
25378659 |
aaaattcatattcccaagatgcaactccacgttgttctgattctgaattccattcagcattggaggaaggtagtggtcagaattaaggtaattcatcata |
25378758 |
T |
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| Q |
407 |
ggtgtcgaagaagtactcaagtacatgttgttttgtgaatttggcttagggtaattggaaggattggaatgaacaaatccacaatcagtaacatcaggga |
506 |
Q |
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| T |
25378759 |
ggtgtggaagaagtactcaagtacatgttgttttgtgaatttggcttagggtaattggaaggattggaatgaacaaatccacaatcagtaacatcaggga |
25378858 |
T |
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| Q |
507 |
gaatctgattactgttagtttgggaagaataatccaatggataagagtttgaagagggtttct |
569 |
Q |
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| T |
25378859 |
gaatctgattactgttagtttgggaagaataatccaatggataagagtttgaagagggtttct |
25378921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 25378436 - 25378513
Alignment:
| Q |
85 |
caagactaaacaatccaaattaatgtcaaatgcatactaccatgctatagtggaagcatggtttatcaaacgtggaag |
162 |
Q |
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| T |
25378436 |
caagactaaacaatccaaattaatgtcaaatgcatactaccatgctatagtggaagcatggtttatcaaacgtggaag |
25378513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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