View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15999_low_41 (Length: 221)

Name: NF15999_low_41
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15999_low_41
NF15999_low_41
[»] chr4 (10 HSPs)
chr4 (33-200)||(7053091-7053259)
chr4 (114-200)||(7047107-7047193)
chr4 (118-189)||(7027360-7027431)
chr4 (19-90)||(53432084-53432155)
chr4 (38-86)||(28589807-28589855)
chr4 (46-89)||(669695-669738)
chr4 (117-196)||(7020410-7020489)
chr4 (33-91)||(2162630-2162688)
chr4 (33-89)||(668409-668465)
chr4 (47-91)||(40792772-40792816)
[»] chr8 (6 HSPs)
chr8 (38-92)||(28735008-28735062)
chr8 (33-90)||(41743652-41743709)
chr8 (20-92)||(45437506-45437578)
chr8 (20-92)||(38696328-38696400)
chr8 (38-90)||(45394989-45395041)
chr8 (47-91)||(32693851-32693895)
[»] chr3 (5 HSPs)
chr3 (33-91)||(28909642-28909700)
chr3 (33-86)||(37735332-37735385)
chr3 (41-92)||(20288269-20288320)
chr3 (33-92)||(42684896-42684955)
chr3 (38-91)||(3208505-3208558)
[»] chr1 (3 HSPs)
chr1 (47-88)||(30535720-30535761)
chr1 (33-92)||(15746803-15746862)
chr1 (33-90)||(42245924-42245981)
[»] chr2 (8 HSPs)
chr2 (33-92)||(30749330-30749389)
chr2 (38-92)||(34512834-34512888)
chr2 (46-92)||(35061291-35061337)
chr2 (33-86)||(2277506-2277559)
chr2 (33-86)||(34147162-34147215)
chr2 (33-86)||(34148397-34148450)
chr2 (39-92)||(34513596-34513649)
chr2 (20-92)||(34463988-34464060)
[»] scaffold2071 (1 HSPs)
scaffold2071 (33-91)||(718-776)
[»] chr5 (4 HSPs)
chr5 (38-92)||(1009204-1009258)
chr5 (33-91)||(30857821-30857879)
chr5 (33-86)||(32759085-32759138)
chr5 (38-92)||(8523788-8523842)
[»] scaffold0078 (1 HSPs)
scaffold0078 (33-86)||(18838-18891)
[»] scaffold0011 (1 HSPs)
scaffold0011 (20-92)||(127453-127525)
[»] chr7 (2 HSPs)
chr7 (38-86)||(46201157-46201205)
chr7 (33-92)||(47060512-47060571)
[»] chr6 (2 HSPs)
chr6 (39-86)||(7310302-7310349)
chr6 (33-89)||(17593604-17593660)
[»] scaffold0034 (1 HSPs)
scaffold0034 (38-92)||(108533-108587)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 7053259 - 7053091
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattaggnnnnnnn-tgacctattaagccttgcaaatatctacatgg 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  7053259 ggacaaaaatataagttttattaattatggaaccaaaatgtaaactgaaaattaattaggggaaaaaatgacctattaagccttgcaaatatctacatgg 7053160  T
Q  132 tgacatatgattcgatgcatttacacagacaaaatgtgtaaactaaattggtaataatattaccgcata 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7053159 tgacatatgattcgatgcatttacacagacaaaatgtgcaaactaaattggtaataatattaccgcata 7053091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 7047193 - 7047107
Alignment:
Q  114 ttgcaaatatctacatggtgacatatgattcgatgcatttacacagacaaaatgtgtaaactaaattggtaataatattaccgcata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||    
T  7047193 ttgcaaatatctacatggtgacatatgattcgatgcatttacaccgacaaaatgtacaaactaaattggtaataatatcaccgcata 7047107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 7027431 - 7027360
Alignment:
Q  118 aaatatctacatggtgacatatgattcgatgcatttacacagacaaaatgtgtaaactaaattggtaataat 189  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||  |||||||||||||||||||    
T  7027431 aaatatctacattgtgacatatgattcgatgcatttacaacgacaaaatgtacaaactaaattggtaataat 7027360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 53432155 - 53432084
Alignment:
Q  19 aaggcaaacaggatggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaatta 90  Q
    |||||||||  || |||| |||||||||||||||||| |||||| ||||||||| |||||  ||||||||||    
T  53432155 aaggcaaacttgagggaccaaaacataagttttattacttatgggaccaaaatgaaaacttgaaattaatta 53432084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 28589855 - 28589807
Alignment:
Q  38 aaaacataagttttattaattatggaaccaaaatgtaaactgaaaatta 86  Q
    ||||||||||||||| || |||||| ||||||||| |||||||||||||    
T  28589855 aaaacataagttttaatacttatgggaccaaaatgaaaactgaaaatta 28589807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 669695 - 669738
Alignment:
Q  46 agttttattaattatggaaccaaaatgtaaactgaaaattaatt 89  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||    
T  669695 agttttattaattatgggaccaaaatgaaaattgaaaattaatt 669738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 7020489 - 7020410
Alignment:
Q  117 caaatatctacatggtgacatatgattcgatgcatttacacagacaaaatgtgtaaactaaattggtaataatattaccg 196  Q
    ||||||||||||  |||| ||||||||| |||||||||||| || || || |  | | ||||||||||||||||||||||    
T  7020489 caaatatctacaatgtgatatatgattccatgcatttacaccgataatatatacatattaaattggtaataatattaccg 7020410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 2162688 - 2162630
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattag 91  Q
    |||| |||| || |||||||||| |||||| || |||||| ||||||||||||||||||    
T  2162688 ggaccaaaatatgagttttattagttatgggactaaaatgaaaactgaaaattaattag 2162630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 668465 - 668409
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaatt 89  Q
    |||| ||||| | |||||||||| |||||  ||||||||| ||||||||||||||||    
T  668465 ggaccaaaacgtgagttttattagttatgagaccaaaatgaaaactgaaaattaatt 668409  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 40792816 - 40792772
Alignment:
Q  47 gttttattaattatggaaccaaaatgtaaactgaaaattaattag 91  Q
    |||||||||||| ||| ||||||||| ||||| ||||||||||||    
T  40792816 gttttattaattgtgggaccaaaatgaaaacttaaaattaattag 40792772  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 28735062 - 28735008
Alignment:
Q  38 aaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    ||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||    
T  28735062 aaaacatgagttttattaattatggaaccaaaatgaacacttaaaattaattagg 28735008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 41743652 - 41743709
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaatta 90  Q
    |||| |||||||||||||||||| |||||| ||||||||| ||||| |||||||||||    
T  41743652 ggaccaaaacataagttttattacttatgggaccaaaatgaaaacttaaaattaatta 41743709  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 45437506 - 45437578
Alignment:
Q  20 aggcaaacaggatggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    ||||||||| || |||| ||||||| ||||||||||||||||| | ||||||| |||||  ||||||||||||    
T  45437506 aggcaaacacgagggaccaaaacatgagttttattaattatgggatcaaaatgaaaacttgaaattaattagg 45437578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 38696400 - 38696328
Alignment:
Q  20 aggcaaacaggatggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    ||||||||  || |||| ||||||| |||||||||| |||||  ||||||||| ||||| |||||||||||||    
T  38696400 aggcaaacttgagggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttaaaattaattagg 38696328  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 45395041 - 45394989
Alignment:
Q  38 aaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaatta 90  Q
    ||||||| ||||||||||||||||| | ||||||| ||||| |||||||||||    
T  45395041 aaaacatgagttttattaattatgggatcaaaatgaaaacttaaaattaatta 45394989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 32693895 - 32693851
Alignment:
Q  47 gttttattaattatggaaccaaaatgtaaactgaaaattaattag 91  Q
    |||||||||||| ||| ||||||||| ||||| ||||||||||||    
T  32693895 gttttattaattgtgggaccaaaatgaaaacttaaaattaattag 32693851  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 28909642 - 28909700
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattag 91  Q
    |||| ||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||    
T  28909642 ggaccaaaacatgagttttattagttatgggaccaaaatgaaaactgaaaattaattag 28909700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 37735385 - 37735332
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaatta 86  Q
    |||| |||||||| |||||||||||||||| ||||||||| ||||| |||||||    
T  37735385 ggactaaaacatacgttttattaattatgggaccaaaatgaaaacttaaaatta 37735332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 20288269 - 20288320
Alignment:
Q  41 acataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    |||| ||||||||||||||||| | ||||||| ||||| |||||||||||||    
T  20288269 acatgagttttattaattatgggatcaaaatgaaaactaaaaattaattagg 20288320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 42684955 - 42684896
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    |||| ||||| | ||||||||| ||||||||||||||||| ||||| ||||||| |||||    
T  42684955 ggactaaaacgtcagttttattcattatggaaccaaaatgaaaacttaaaattatttagg 42684896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 3208558 - 3208505
Alignment:
Q  38 aaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattag 91  Q
    ||||| || |||||||||||||||| ||||||||| ||| || |||||||||||    
T  3208558 aaaacgtacgttttattaattatgggaccaaaatgaaaaatggaaattaattag 3208505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 30535720 - 30535761
Alignment:
Q  47 gttttattaattatggaaccaaaatgtaaactgaaaattaat 88  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  30535720 gttttattaattatggaaccaaaatgaaaactgaaaattaat 30535761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 15746803 - 15746862
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    |||| ||||||| |||||||||| |||||| ||||||||| ||| || ||||||||||||    
T  15746803 ggaccaaaacatgagttttattacttatgggaccaaaatgaaaattggaaattaattagg 15746862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 42245924 - 42245981
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaatta 90  Q
    |||| |||| || ||||||||||||||||||||||||||  |||||  ||||||||||    
T  42245924 ggaccaaaagatgagttttattaattatggaaccaaaataaaaacttgaaattaatta 42245981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 30749330 - 30749389
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    |||| ||||||| ||||||||||||||||| || |||||| |||||| ||||||||||||    
T  30749330 ggaccaaaacatgagttttattaattatgggactaaaatgaaaactggaaattaattagg 30749389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 34512888 - 34512834
Alignment:
Q  38 aaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||  |||||||||||    
T  34512888 aaaacatgagttttattaattatgggaccaaaatgaaaactggtaattaattagg 34512834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 35061337 - 35061291
Alignment:
Q  46 agttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||||    
T  35061337 agttttattagttatgggaccaaaatgaaaactgaaaattaattagg 35061291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 2277506 - 2277559
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaatta 86  Q
    |||| |||||||||||||||||| |||||| ||||||||| |||||| ||||||    
T  2277506 ggaccaaaacataagttttattacttatgggaccaaaatgaaaactggaaatta 2277559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 34147215 - 34147162
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaatta 86  Q
    |||| ||||||| |||||||||| |||||| ||||||||| |||||||||||||    
T  34147215 ggaccaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 34147162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 34148397 - 34148450
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaatta 86  Q
    |||| ||||||| |||||||||| ||||||||| |||||| |||||||||||||    
T  34148397 ggaccaaaacatgagttttattatttatggaactaaaatgaaaactgaaaatta 34148450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 34513596 - 34513649
Alignment:
Q  39 aaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    |||||| ||||||||||||||||||||||||||| ||| ||  |||||||||||    
T  34513596 aaacatgagttttattaattatggaaccaaaatgaaaattggtaattaattagg 34513649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 34464060 - 34463988
Alignment:
Q  20 aggcaaacaggatggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    ||||||||  ||||||| |||| ||  ||||||||||||||  |||||||||| ||||||  |||||||||||    
T  34464060 aggcaaacctgatggaccaaaagatttgttttattaattatcaaaccaaaatgaaaactggtaattaattagg 34463988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 718 - 776
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattag 91  Q
    |||| ||||||| |||||||||| |||||| ||||||||| |||||| |||||||||||    
T  718 ggaccaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaattag 776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 1009258 - 1009204
Alignment:
Q  38 aaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    ||||||| |||||||||| |||||||||||||||| |||||  ||||||||||||    
T  1009258 aaaacatgagttttattagttatggaaccaaaatgaaaacttgaaattaattagg 1009204  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 30857879 - 30857821
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattag 91  Q
    |||| |||||||| |||||||||||| ||| ||||||||| ||||| ||||||||||||    
T  30857879 ggaccaaaacatacgttttattaattgtgggaccaaaatgaaaacttaaaattaattag 30857821  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 32759085 - 32759138
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaatta 86  Q
    |||| ||||||| |||||||||| ||||||||| |||||| |||||||||||||    
T  32759085 ggaccaaaacatgagttttattatttatggaactaaaatgaaaactgaaaatta 32759138  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 8523788 - 8523842
Alignment:
Q  38 aaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    ||||||| |||||||||| |||||| ||||||||| |||||  ||||||||||||    
T  8523788 aaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattagg 8523842  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 18891 - 18838
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaatta 86  Q
    |||| ||||||||||||||||||| ||||| ||||||||| ||||| |||||||    
T  18891 ggactaaaacataagttttattaaatatgggaccaaaatgaaaacttaaaatta 18838  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 127525 - 127453
Alignment:
Q  20 aggcaaacaggatggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    ||||||||| || |||| ||||||| |||||||||| |||||| ||||||| | |||||  ||||||||||||    
T  127525 aggcaaacatgagggaccaaaacatgagttttattagttatgggaccaaaacgaaaacttgaaattaattagg 127453  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 46201205 - 46201157
Alignment:
Q  38 aaaacataagttttattaattatggaaccaaaatgtaaactgaaaatta 86  Q
    ||||||| |||||||||| |||||| ||||||||| |||||||||||||    
T  46201205 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 46201157  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 47060512 - 47060571
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    |||| ||||| || |||||||||||||| | ||||||||| ||||| |||||||||||||    
T  47060512 ggaccaaaacgtacgttttattaattataggaccaaaatgaaaacttaaaattaattagg 47060571  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 7310349 - 7310302
Alignment:
Q  39 aaacataagttttattaattatggaaccaaaatgtaaactgaaaatta 86  Q
    ||||||| |||||||||||||||| ||||||||| ||||| |||||||    
T  7310349 aaacatacgttttattaattatgggaccaaaatgaaaacttaaaatta 7310302  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 17593660 - 17593604
Alignment:
Q  33 ggacaaaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaatt 89  Q
    |||| ||||| ||| |||||||||||| |||||||||||| || ||| |||||||||    
T  17593660 ggactaaaacgtaacttttattaattagggaaccaaaatgaaacctgcaaattaatt 17593604  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 108587 - 108533
Alignment:
Q  38 aaaacataagttttattaattatggaaccaaaatgtaaactgaaaattaattagg 92  Q
    ||||| || |||||||||||||||| | ||||||||||| || ||||||||||||    
T  108587 aaaacgtacgttttattaattatgggatcaaaatgtaaaatggaaattaattagg 108533  T

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