View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_46 (Length: 204)
Name: NF15999_low_46
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 12002401 - 12002231
Alignment:
| Q |
12 |
catcatcaaagtttaaactatgtcagtaagcaagaaacagtaagcatcaatatcgtctactttcttcatccgcaagccatacaaacccaatatgctatgg |
111 |
Q |
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| T |
12002401 |
catcatcaaagtttaaactatgtcagtaagaaagaaacagtaagcatcaatatcgtctactttcttcatccgcaagccatacaaacccaatatgctatgg |
12002302 |
T |
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| Q |
112 |
attaccacacaccctaatatacttcaagacagccaaaaatatcacaaataatactccaagaaagataaggtatc |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12002301 |
attaccacacaccctaatatacttcaagacagccaaaaatatcaca---aatactccaagaaagataaggtatc |
12002231 |
T |
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