View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15999_low_6 (Length: 525)
Name: NF15999_low_6
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Complemental strand, 35428928 - 35428435
Alignment:
| Q |
18 |
gttttgtccaaatatatttttattcgatgagtttacacccggtgatcacacctgttcaatattttgagatttccttcgatcaggaaagtattaatttttg |
117 |
Q |
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||||||||||||| ||||||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35428928 |
gttttgtccaaatttatttttatctgatgagattacatccggtcatcacacctcttcaatattttgagatttccttcgatcaggaaagtattaatttttg |
35428829 |
T |
|
| Q |
118 |
aaatatatatacacggaaagattggagaaaaataatgatgagaaagataccaaaattatacttatatctttttctataaatatcctt-gatggaagatta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| |
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| T |
35428828 |
aaatatatatacacggaaagattggagaaaaataataatgagaaagataccaaaattatacttatatctttttctacaaatatcctttgatggaaaatta |
35428729 |
T |
|
| Q |
217 |
ttttagctctataattcggtgcaagatcttgaacaaaaagtatggaaaaattgaggaaaatttaaactatttcaagatacatctattttgtttcgaggat |
316 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35428728 |
ttttagctctataattcggcgcaagatcttgaacaaaaagtatggaaaaattgaggaaaatttaaactatttcaagatacatctattttgtttcgaggat |
35428629 |
T |
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| Q |
317 |
tctcccacaaaattaccatcagaaaattatttgtttaaaaataaattaattgtgacccattgtgtgnnnnnnnagataaactaatgagacaatttcacct |
416 |
Q |
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| T |
35428628 |
tctcccacaaaattaccaacagaaaattatttctttaaaaagaaattaattgtgacccattgtgtgtttttttagataaactaatgagacaatttcacct |
35428529 |
T |
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| Q |
417 |
ctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgattatagaagtattttttcat |
514 |
Q |
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| T |
35428528 |
----ctcttcatggaatgtcaatggtcataataggtttggtttggttctcatttaggtgtcgtttttaattcacatgattatagaagtattttttcat |
35428435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 501
Target Start/End: Complemental strand, 35419795 - 35419314
Alignment:
| Q |
18 |
gttttgtccaaatatatttttattcgatgagtttacacccggtgatcacacctgttcaatattttgagatttccttcgatcaggaaagtattaatttttg |
117 |
Q |
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||||||||||||| ||||||||| |||||| ||||| ||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||||| ||| |
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| T |
35419795 |
gttttgtccaaatttatttttatctgatgagattacatccggtcatcacacctcttcaatattttgagatttccttctatcagggaagtattaattattg |
35419696 |
T |
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| Q |
118 |
aaatatatatacacggaaagattggagaaaaataatgatgagaaagataccaaaattatacttatatctttttctataaatatccttgatggaagattat |
217 |
Q |
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| T |
35419695 |
aaatatatatacacggaaaggttggagaaaaataataatgagacagataccaaaattatacttatacctttttctacaaatatccttgatggcagattat |
35419596 |
T |
|
| Q |
218 |
tttagctctataattcggtgcaagatcttgaacaaaaagtatggaaaaattgaggaaaatttaaactatttcaagatacatctattttgtttcgaggatt |
317 |
Q |
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| T |
35419595 |
tctagctctataatttggcgcaagatcttg-ataaaatgtatggaaaaactgaggaaaattaaaactattttaagatagatctattttgtttcgaggttt |
35419497 |
T |
|
| Q |
318 |
ctcc-cacaaaattaccatcagaaaattatttgtttaaaaataaattaattgtgacccat--tgtgtgnnnnnnnagataaactaatgagacaatttcac |
414 |
Q |
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|||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||||| | | ||| |||| |||||||||||| |
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| T |
35419496 |
ctccacacaaaattaccaataaaaaattatttgtttaaaaataaatcaattgtgacccattgtgtgtgattttttatacaaaataattagacaatttcac |
35419397 |
T |
|
| Q |
415 |
ctctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgattataga |
501 |
Q |
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|| | |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35419396 |
ct----cacttcatggaatgtcaatggtcaaaataacattggtttgattctcatttaggtgtcgtttttaattcacatgattctaga |
35419314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 496
Target Start/End: Complemental strand, 16436406 - 16436312
Alignment:
| Q |
398 |
taatgagacaatttcacctctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgatt |
496 |
Q |
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||||||||||||||||| | ||||| ||||||||||| |||||| | ||||| ||||||| |||| ||||||||| || |||||||| ||||||| |
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| T |
16436406 |
taatgagacaatttcac----acctctttatggaatgtcattggtcaaagtaggtatggtttgcttcttctttaggtgtggtatttaattcgcatgatt |
16436312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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