View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15999_low_8 (Length: 506)
Name: NF15999_low_8
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15999_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 38216082 - 38216574
Alignment:
| Q |
1 |
atatcagtttgtagttcatttcagggggaaataaaaccatgctttgccattgaatttctaaaggttaaggttgtaacttggagaaagtaaattaggcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38216082 |
atatcagtttgtagttcatttcagggggaaataaaaccatgctttgccattgaatttctaaaggttaaggttgtaacttggagaaagtaaattaggcaaa |
38216181 |
T |
|
| Q |
101 |
agttttgaaagcaattctttgcagcaaaaccatacttggctatgttatgatgtagtaattccttatacagtttaattttaatctaatattcaaaaccata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38216182 |
agttttgaaagcaattctttgcagcaaaaccatacttggctatgttatgatgtagtaattccttatacagtttaattttaacctaatattcaaaaccata |
38216281 |
T |
|
| Q |
201 |
cactgtatatctgtctcaaaaaactaagcataatatcactctgactcagtttgaaagaaaaatgatgcaccaactgatgtatatcgtgtggacatttcat |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
38216282 |
cactgtctatctgtctcaaaaaactaagcataagatcactctgactcagtttgaaagaaaaatgatgcatcaactgatgtgtatcgtgtggacatttcat |
38216381 |
T |
|
| Q |
301 |
tcaccaacatcaatactacagttacatttgcattatcatgacccacgaccacgattgatgcatacataatttccatgccatatatgggggaatcacaaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
38216382 |
tcaccaacatcaatactacagttacatttgcattatcatgacccacgaccacgattgatgcatacataatttccatgccatatat--gggaaccacaaag |
38216479 |
T |
|
| Q |
401 |
ctagctctaaccaaatatgatacatgattgtatgtcattaagtaggatgcttcacatctttaaaat-aaaaagtcactcatggacgcctatgctt |
494 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
38216480 |
ctagttctaaccaaatatgatacatgattgtatgtcattaagtaggatgcttcacatctttaaaataaaaaaatcactcatggatgcctatgctt |
38216574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University