View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15999_low_9 (Length: 480)

Name: NF15999_low_9
Description: NF15999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15999_low_9
NF15999_low_9
[»] chr5 (14 HSPs)
chr5 (1-464)||(38979756-38980215)
chr5 (1-464)||(39910270-39910713)
chr5 (263-437)||(39856949-39857122)
chr5 (188-437)||(39864254-39864494)
chr5 (188-437)||(39897637-39897879)
chr5 (263-437)||(39736969-39737143)
chr5 (263-465)||(39847135-39847346)
chr5 (1-61)||(39846956-39847016)
chr5 (109-155)||(39737201-39737247)
chr5 (265-326)||(37465492-37465553)
chr5 (76-156)||(37465353-37465433)
chr5 (77-167)||(39897571-39897661)
chr5 (73-166)||(39864185-39864277)
chr5 (1-61)||(39856764-39856823)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 38980215 - 38979756
Alignment:
Q  1 aaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagcttataactaaacattcatttttgtatcacatttgacgaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38980215 aaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagcttttaactaaacattcatttttgtatcacatttgacgaaac 38980116  T
Q  101 aaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatat----tcgaaggatgaagccaccacataaggataacgcttgtgcaca 196  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||    |||||||||||||||||   |||||||||||| |||||||||    
T  38980115 aaattgtttttaactaaaccacaaacagaaaatacctggtgattgtgcacatatatattcgaaggatgaagccac---ataaggataacgtttgtgcaca 38980019  T
Q  197 tattccaagtatgaacgcacatcaggaaagc-gatttgtttcactttcacaatatccctagatgaatctttctgaaagcatataatatcaccattttcta 295  Q
    |||||||||||| ||| |||||||||||||| ||||||||||||      ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38980018 tattccaagtataaactcacatcaggaaagcagatttgtttcac------aatatccatagatgaatctttctgaaagcatataatatcaccattttcta 38979925  T
Q  296 actgcattcatggaaatacaaatcaataagataaccagttgtacagtaacttagtgggtgccaactggatgtctactatacctcgctttcttgaaatgtt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||    
T  38979924 actgcattcatggaaatacaaatcaataagataaccagttgtacagtaacttagtgtgtgccaactgggtgagtactatacctcgctttcttgaaatgtt 38979825  T
Q  396 aatttcatgtcaacaggcagatacttgacatttggttcaaacacttcctgcaatacaataggcacaatt 464  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  38979824 aatttcatgtcaacaggcagacacttgacatttggttcaaacacttcctgcaatacaacaggcacaatt 38979756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 39910270 - 39910713
Alignment:
Q  1 aaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagcttataactaaacattcatttttgtatcacatttgacgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  39910270 aaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagctt------------tcatttttgtatcacatttgacgaaac 39910357  T
Q  101 aaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattcgaaggatgaagccaccacataaggataacgcttgtgcacatatt 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  39910358 aaattgtttttaactaaaccacaaacagaaaatacctggcgattgtgcacatattcgaaggatgaagccac---ataaggataacgcttgtgcacatatt 39910454  T
Q  201 ccaagtatgaacgcacatcaggaaagcg-atttgtttcactttcacaatatccctagatgaatctttctgaaagcatataatatcaccattttctaactg 299  Q
    |||||||||||| ||||||| ||||| | |||||||||      ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  39910455 ccaagtatgaacacacatcacgaaaggggatttgtttc------acaatatccatagatgagtctttctgaaagcatataatatcaccattttctaactg 39910548  T
Q  300 cattcatggaaatacaaatcaataagataaccagttgtacagtaacttagtgggtgccaactggatgtctactatacctcgctttcttgaaatgttaatt 399  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39910549 cattcatggaaatacaaatcaataagataacctgttgtacagtaacttagtgggtgccaactggatgtctactatacctcgctttcttgaaatgttaatt 39910648  T
Q  400 tcatgtcaacaggcagatacttgacatttggttcaaacacttcctgcaatacaataggcacaatt 464  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  39910649 tcatgtcaacaggcagacacttgacatttggttcaaacacttcctgcaatacaatgggcacaatt 39910713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 437
Target Start/End: Original strand, 39856949 - 39857122
Alignment:
Q  263 ctttctgaaagcatataatatcaccattttctaactgcattcatggaaatacaaatcaataagataaccagttgtacagtaacttagtgggtgccaactg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |   |||||||||| ||| |   ||||||    
T  39856949 ctttctgaaagcatataatatcaccattttctaactgcattcatggaaaaacaaatcaataagaaaaccaatgaaacagtaacttggtgtgcatcaactg 39857048  T
Q  363 gatgtctactatacctcgctttcttgaaatgttaatttcatgtcaacaggcagatacttgacatttggttcaaac 437  Q
    | ||| || | |||||| ||||||||||||||| ||| | | | || ||||| | || |||||||||||| ||||    
T  39857049 ggtgtgtaat-tacctcactttcttgaaatgttgattccttcttaataggcaaacacatgacatttggtttaaac 39857122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 437
Target Start/End: Original strand, 39864254 - 39864494
Alignment:
Q  188 ttgtgcacatattccaagtatgaacgcacatcaggaaagcg-atttgtttcactttcacaatatccctagatgaatctttctgaaagcatataatatcac 286  Q
    |||||||||||||||||||||||||||||||||||| |||| |  |||||| ||||      || | |    ||| ||||||||||||||||||||||||    
T  39864254 ttgtgcacatattccaagtatgaacgcacatcaggatagcggaaatgtttctcttt------attcattttagaagctttctgaaagcatataatatcac 39864347  T
Q  287 cattttctaactgcattcatggaaatacaaatcaataagataaccagttgtacagtaacttagtgggtgccaactggatgtctactatacctcgctttct 386  Q
    ||||||||||||||| ||| ||||| | |||||||||||| ||||| |  | |||||||||||||     ||||||| | | |  |||||||| ||||||    
T  39864348 cattttctaactgcactcacggaaa-ataaatcaataagaaaaccaatgatgcagtaacttagtg---tacaactgggtatgtgttatacctcactttct 39864443  T
Q  387 tgaaatgttaatttcatgtcaacaggcagatacttgacatttggttcaaac 437  Q
    ||||||||||||||| |||| ||||||  | || ||||| |||||||||||    
T  39864444 tgaaatgttaatttcttgtcgacaggctcacacatgacagttggttcaaac 39864494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 188 - 437
Target Start/End: Original strand, 39897637 - 39897879
Alignment:
Q  188 ttgtgcacatattccaagtatgaacgcacatcaggaaagcg-atttgtttcactttcacaatatccctagatgaatctttctgaaagcatataatatcac 286  Q
    |||||||||||||||||||||||| ||||||||||| || | || ||||||      ||||||||  |||  ||| |||| |||  ||||||||||||||    
T  39897637 ttgtgcacatattccaagtatgaaggcacatcaggatagaggatatgtttc------acaatatcaatagcagaagctttttgatggcatataatatcac 39897730  T
Q  287 cattttctaactgcattcatggaaatacaaatcaataagataaccagttgtacagtaacttagtgggtgccaactggatgtctactatacctcgctttct 386  Q
    ||||||||||||||||||||||||| |  ||||||||||| |  || |  || ||  ||||||||     ||||||||| | ||||||||||| ||||||    
T  39897731 cattttctaactgcattcatggaaaaatgaatcaataagaaactcaatgatatag--acttagtgaccatcaactggatatgtactatacctcactttct 39897828  T
Q  387 tgaaatgttaatttcatgtcaacaggcagatacttgacatttggttcaaac 437  Q
    |||||||||||||||  || |||||||  | || |||||||||||||||||    
T  39897829 tgaaatgttaatttctggtaaacaggctcacacatgacatttggttcaaac 39897879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 437
Target Start/End: Complemental strand, 39737143 - 39736969
Alignment:
Q  263 ctttctgaaagcatataatatcaccattttctaactgcattcatggaaatacaaatcaataagataaccagttgtacagtaacttagtgggtgccaactg 362  Q
    |||||||||||||||||||| ||||||| |  ||||||||||||||||| ||||||||||| || || || |  || |||||||||||| |   | ||||    
T  39737143 ctttctgaaagcatataatagcaccattgttcaactgcattcatggaaaaacaaatcaatatgaaaatcaatgataaagtaacttagtgagcatcgactg 39737044  T
Q  363 gatgtctactatacctcgctttcttgaaatgttaatttcatgtcaacaggcagatacttgacatttggttcaaac 437  Q
    | | | |||||||||| |||||||  ||||||||||||| ||||||||||   | | || |||||||||||||||    
T  39737043 ggtatgtactataccttgctttctgtaaatgttaatttcttgtcaacaggatcacatttaacatttggttcaaac 39736969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 465
Target Start/End: Original strand, 39847135 - 39847346
Alignment:
Q  263 ctttctgaaagcatataatatcaccattttctaactgcattcatgg--aaatacaaatcaataagataaccagttgtacagtaa----cttagtgggtgc 356  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| |  ||| | ||||| |||||| ||||| ||  |  || |    ||||||  ||||    
T  39847135 ctttttgaaagcatataatatcaccattgtctaactgcattcatagaaaaaaataaatcgataagaaaaccaattaaaatgttaatttcttagtatgtgc 39847234  T
Q  357 caactggatgtctactatacctcgctttcttgaaatgttaatttcatgtcaacaggcagatacttgacatttggttcaaa---cacttcctgcaatacaa 453  Q
    ||||||| | | |||||||||||| | |||| ||||||||||||| | |||| ||| | | ||||||| |||||||||||    | ||||||||  ||||    
T  39847235 caactgggtatttactatacctcgttatcttcaaatgttaatttcttctcaataggaaaacacttgacttttggttcaaatctaatttcctgcacaacaa 39847334  T
Q  454 taggcacaattt 465  Q
    ||||||||||||    
T  39847335 taggcacaattt 39847346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 39846956 - 39847016
Alignment:
Q  1 aaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagctt 61  Q
    ||||||| ||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||    
T  39846956 aaggaaacaacattcagttcaagataagcctagaaacaggataagaataaatgggtagctt 39847016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 39737247 - 39737201
Alignment:
Q  109 tttaactaaaccccaaacagaaaatacctggcgattgtgcacatatt 155  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||||    
T  39737247 tttaaataaacctcaaaaagaaaatacctggcgattgtgcacatatt 39737201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 37465492 - 37465553
Alignment:
Q  265 ttctgaaagcatataatatcaccattttctaactgcattcatggaaatacaaatcaataaga 326  Q
    |||||||||||||||||||| |||| ||| | ||||||||| ||||  ||||||||||||||    
T  37465492 ttctgaaagcatataatatctccatcttcaagctgcattcacggaagaacaaatcaataaga 37465553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 37465353 - 37465433
Alignment:
Q  76 atttttgtatcacatttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattc 156  Q
    ||||||| |||||||   |||||||||||||  ||||| ||| || ||||  ||||||||||||||||||||||| |||||    
T  37465353 atttttggatcacatcaaacgaaacaaattgcctttaattaatcctcaaaaggaaaatacctggcgattgtgcacgtattc 37465433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 39897571 - 39897661
Alignment:
Q  77 tttttgtatcacatttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattcgaaggatgaag 167  Q
    |||||| |||||||| ||| ||||||||||  || || |||||| ||||  ||||||||| ||  ||||||||||||||| ||| ||||||    
T  39897571 tttttgaatcacattagactaaacaaattgacttcaattaaaccgcaaaaggaaaataccagggtattgtgcacatattccaagtatgaag 39897661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 39864185 - 39864277
Alignment:
Q  73 ttcatttttgtatcacatttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattcgaaggatgaa 166  Q
    |||||||||| |||||||  ||| |||| |||||  ||||| |||||  |||| || |||||||||| |||||||||||||||| ||| |||||    
T  39864185 ttcatttttgcatcacatc-gactaaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaa 39864277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 39856764 - 39856823
Alignment:
Q  1 aaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagctt 61  Q
    ||||||| ||||||| | |||||||| ||||||||||||||| ||||| | ||||||||||    
T  39856764 aaggaaacaacattc-gttcaagataagcctagaaacatgattagaataactgggtagctt 39856823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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