View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1599_low_1 (Length: 581)
Name: NF1599_low_1
Description: NF1599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1599_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 15 - 540
Target Start/End: Complemental strand, 5071235 - 5070707
Alignment:
| Q |
15 |
gactcgatttatggttttgcatttattcaaaatcatgctaaaatacctatttcatggaaattcctccctatggaggactcgaaccatggtaataggttga |
114 |
Q |
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| T |
5071235 |
gactcgatttatggttttgcatttattcaaaatcatgctaaaatacctatttcatggaaattcctccatatgggggactcgaaccatggtaataggttga |
5071136 |
T |
|
| Q |
115 |
ttcaagttaacacaatacagttgcctataaataaccgtttcagatagcattactcacaaatcacaaaataaaatcttaaagagatgaaacacaaaaagct |
214 |
Q |
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| T |
5071135 |
ttcaagttaacacaatacagttgcctataaataaccgtttcagatagcattacacacaaatcacaaaatagaatcttaaagagatgaaacacaaaaagct |
5071036 |
T |
|
| Q |
215 |
agtgttttgagagttcatacatcttggttgaggttctagggttaggaaatactttctaaacaccatggaaagagagaattcatttaaggaaggattcaag |
314 |
Q |
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| T |
5071035 |
agtgttttgagagtttatacatcttggttgaggttctagggttaggaaatactttctaaacaccatggaaagagagaattcatttaaggaaggattcaag |
5070936 |
T |
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| Q |
315 |
ctttttctcaccatctgcgtagagatcttcttgcgagtcaagaatgacttgaaaaactgatggaaattatggtttattgttgaaactaatttcttataac |
414 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5070935 |
ctttctctcaccatctgcgtagagatcttcttgcgagtcaagaatgacttgaaaaactgatgaaaattatggtttattgttgaaactaatttcttataac |
5070836 |
T |
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| Q |
415 |
atatttgactctaacctattttggtttgacattgtagtgttgacttaagatcttgaagtatact---cctctagatataaggttcaattctccctcattg |
511 |
Q |
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|||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5070835 |
atatttgaatctaacctattttgggttgacattataatgttgacttaagatcttgaagtatactcctcctctagatataaggttcaattctccctcattg |
5070736 |
T |
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| Q |
512 |
ctaatttggttggacaaatttagcttttt |
540 |
Q |
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| T |
5070735 |
ctaatttggttggacaaatttaacttttt |
5070707 |
T |
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