View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1599_low_3 (Length: 229)
Name: NF1599_low_3
Description: NF1599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1599_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 10819082 - 10818881
Alignment:
| Q |
16 |
ttaacaagatacttttgactcggaaattgagcttcaatgcatcaatgtttgtgtaagacatataagtctttatctcataaccctagttgttgaacctcac |
115 |
Q |
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| T |
10819082 |
ttaacaagatactcttgactcggaaattgagcttcaatgcatcaatgtttgtgtaagacatataagtctttatctcataaccctagttgttgaacctcac |
10818983 |
T |
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| Q |
116 |
ctccttagtaaatctgaaaaagaaaattgaaataatgaataacattaaaatgtagatgcatatcttacttattcacaaccactttaaaagtttgttcagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10818982 |
ctccttagtaaatctgaaaaagaaaattgaaataatgaataacattaaaatgtagatgcatatcttacttattcacaaccactttaaaagtttgttcagt |
10818883 |
T |
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| Q |
216 |
tt |
217 |
Q |
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|| |
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| T |
10818882 |
tt |
10818881 |
T |
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