View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16000_high_1 (Length: 853)

Name: NF16000_high_1
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16000_high_1
NF16000_high_1
[»] chr8 (10 HSPs)
chr8 (126-367)||(34741975-34742216)
chr8 (18-131)||(34742302-34742415)
chr8 (422-516)||(19430733-19430826)
chr8 (422-516)||(19436175-19436268)
chr8 (422-516)||(19566882-19566975)
chr8 (422-516)||(19572324-19572417)
chr8 (422-516)||(31031256-31031349)
chr8 (422-516)||(33616064-33616157)
chr8 (422-516)||(13584870-13584968)
chr8 (21-83)||(34751817-34751879)
[»] chr3 (5 HSPs)
chr3 (422-517)||(13022749-13022843)
chr3 (422-517)||(53120221-53120315)
chr3 (422-516)||(33088616-33088709)
chr3 (422-516)||(38436270-38436363)
chr3 (422-487)||(20811112-20811177)
[»] chr1 (13 HSPs)
chr1 (557-800)||(11979994-11980237)
chr1 (425-521)||(38734829-38734924)
chr1 (422-517)||(26650427-26650521)
chr1 (422-516)||(13891505-13891598)
chr1 (422-516)||(14582448-14582541)
chr1 (616-820)||(11953785-11953989)
chr1 (422-516)||(5602170-5602263)
chr1 (429-516)||(39746674-39746760)
chr1 (422-516)||(31289455-31289547)
chr1 (30-83)||(11980881-11980934)
chr1 (422-516)||(12179406-12179494)
chr1 (422-516)||(10106741-10106835)
chr1 (191-272)||(11954460-11954541)
[»] scaffold0132 (2 HSPs)
scaffold0132 (422-517)||(2420-2514)
scaffold0132 (422-517)||(10380-10474)
[»] chr7 (7 HSPs)
chr7 (425-516)||(28291842-28291932)
chr7 (422-517)||(24529090-24529184)
chr7 (422-516)||(9973969-9974062)
chr7 (422-516)||(33227019-33227113)
chr7 (425-516)||(7358037-7358127)
chr7 (457-516)||(10437398-10437456)
chr7 (457-516)||(10451108-10451166)
[»] chr6 (4 HSPs)
chr6 (422-516)||(19478838-19478931)
chr6 (422-485)||(14450626-14450689)
chr6 (422-516)||(10485799-10485890)
chr6 (422-516)||(17289607-17289697)
[»] chr2 (3 HSPs)
chr2 (422-516)||(42915263-42915356)
chr2 (422-516)||(5089778-5089872)
chr2 (423-516)||(39959865-39959952)
[»] chr4 (4 HSPs)
chr4 (422-516)||(10119806-10119899)
chr4 (425-516)||(24490797-24490882)
chr4 (422-516)||(653688-653782)
chr4 (449-518)||(8082771-8082837)
[»] scaffold0011 (2 HSPs)
scaffold0011 (422-516)||(2326-2420)
scaffold0011 (422-516)||(7580-7674)
[»] chr5 (3 HSPs)
chr5 (422-516)||(13581981-13582075)
chr5 (422-462)||(14374824-14374864)
chr5 (422-459)||(7805773-7805810)
[»] scaffold0067 (1 HSPs)
scaffold0067 (422-516)||(33305-33392)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 126 - 367
Target Start/End: Complemental strand, 34742216 - 34741975
Alignment:
Q  126 ctcccatatgcatacatacccacaactacaagcatgatccgcgcattacactggaccaattaattttaagtcagatgatagcaatggcgttgggatcaag 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  34742216 ctcccatatgcatacatacccacaactacaagcatgatccgcgcattacactggaccaatt----ttaagtcagatgatagcaatggcgttgggatcaag 34742121  T
Q  226 tggtgtgcccaaaccccagttgacgttttgcaagaaacaatcccttcatgagctgtattcatgaagtaaagtgtgttgccgatggcaatagggttgaaat 325  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34742120 tggtgtgcccaaaccccagttgacattttggaagaaacaatcccttcatgagctgtattcatgaagtaaagtgtgttgccgatggcaatagggttgaaat 34742021  T
Q  326 tagaaaagcc----tagcagctcaatacttgcaggtatctgtccaa 367  Q
    ||||||||||    ||||||||||||||||||||||||||||||||    
T  34742020 tagaaaagcctagctagcagctcaatacttgcaggtatctgtccaa 34741975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 34742415 - 34742302
Alignment:
Q  18 catatggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatatcattataacatgatttcaagtataacatgatcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34742415 catatggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatatcattataacatgatttcaagtataacatgatcaa 34742316  T
Q  118 acctttgtctccca 131  Q
    || |||||||||||    
T  34742315 acatttgtctccca 34742302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 19430733 - 19430826
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19430733 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19430826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 19436175 - 19436268
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19436175 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19436268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 19566882 - 19566975
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19566882 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19566975  T

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Target: chr8; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 19572324 - 19572417
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19572324 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19572417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 31031256 - 31031349
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31031256 atgtgagacatttttaagtcacacactcacactagttcttataatgtgtttttcttatccaa-ttttctcattagatttaactagtgttccaaca 31031349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 33616157 - 33616064
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  33616157 atgtgagacatttttaagccacatactcacactagttcttatattgtatttttcttatccaa-ttttctcactagatttaactaatgttccaaca 33616064  T

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Target: chr8; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 13584870 - 13584968
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtg-----tttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||     |||||||||||||| |||||||| |||||||||||||||||||||||    
T  13584870 atgtgggacatttttaaatcacacgctcacactaattcttatattgtgttttttttttcttatccaa-ttttctcactagatttaactagtgttccaaca 13584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 34751879 - 34751817
Alignment:
Q  21 atggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 83  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  34751879 atggcacaaaaaccttcagccattccctagttgctatgttgtaagtaaacatatgatacatat 34751817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 422 - 517
Target Start/End: Original strand, 13022749 - 13022843
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  13022749 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 13022843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 422 - 517
Target Start/End: Original strand, 53120221 - 53120315
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 517  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  53120221 atgtgggacatttttaagtcacacactcacactagttcttacatcgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 53120315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 33088709 - 33088616
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  33088709 atgtgggacatttttaagtcacacactcacactagttcttacattatgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 33088616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 38436363 - 38436270
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||| |||||||    
T  38436363 atgtgggacatttttaagtcacacgctcacactagttcttacattgtgtttttcttatccaa-ttttctcactagatttaactggtgctccaaca 38436270  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 422 - 487
Target Start/End: Original strand, 20811112 - 20811177
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttt 487  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20811112 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatttt 20811177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 557 - 800
Target Start/End: Complemental strand, 11980237 - 11979994
Alignment:
Q  557 ccatcttttcataaaagggtcatagatagctccatatttgttctctccaaaggttgtataaaaccatggattttcttgtgagacttgatcaaaatgctga 656  Q
    ||||||||||||| |||||||||| || ||| |||| |  |  |||||||| ||||||||||| ||||||||||| |||||||||||| || ||  ||||    
T  11980237 ccatcttttcatataagggtcatacatggcttcataatcataatctccaaaagttgtataaaagcatggattttcctgtgagacttgagcacaaaactga 11980138  T
Q  657 taaaacctttgagaggttaacaaattattccattgacgacatacaatgcgtaagcgaaaaattatggcaattggaagtcgtgcaagcacaaactcaaata 756  Q
     |||| || || ||| ||| ||| |||||||||||  ||||||||  ||| ||||||| |||| || |||| |||||||||||||| |||  ||||||||    
T  11980137 gaaaaactctgtgagcttatcaagttattccattgctgacatacagcgcggaagcgaataattgtgacaatgggaagtcgtgcaagaacattctcaaata 11980038  T
Q  757 gatcttcaggaaatgttccccaaatttctggttccataaattca 800  Q
    |||||||||||||| || ||||||||| ||||| ||||| ||||    
T  11980037 gatcttcaggaaatttttcccaaatttgtggtttcataacttca 11979994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 425 - 521
Target Start/End: Original strand, 38734829 - 38734924
Alignment:
Q  425 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacactggt 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  38734829 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacaatggt 38734924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 422 - 517
Target Start/End: Complemental strand, 26650521 - 26650427
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 517  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  26650521 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 26650427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 13891505 - 13891598
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  13891505 atgtgggacatttttaagtcacacacttacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 13891598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 14582448 - 14582541
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  14582448 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 14582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 616 - 820
Target Start/End: Complemental strand, 11953989 - 11953785
Alignment:
Q  616 aaaaccatggattttcttgtgagacttgatcaaaatgctgataaaacctttgagaggttaacaaattattccattgacgacatacaatgcgtaagcgaaa 715  Q
    |||||||||||||| |||||||||||| |  | | |||||| |||| ||||||||||||| |||||||||||||||  | |||||| | || || |  |     
T  11953989 aaaaccatggatttacttgtgagactttagaacattgctgagaaaaactttgagaggttatcaaattattccattgctggcatacagtacggaaacatat 11953890  T
Q  716 aattatggcaattggaagtcgtgcaagcacaaactcaaatagatcttcaggaaatgttccccaaatttctggttccataaattcaacaatacatgacatt 815  Q
    |||| |||| || ||||||||||||||||||| |||||||||||||||||| ||  || ||||||||||||||| ||||| ||||   |||||||||| |    
T  11953889 aattttggccatgggaagtcgtgcaagcacaacctcaaatagatcttcagggaacttttcccaaatttctggtttcataacttcagtcatacatgacact 11953790  T
Q  816 ctaga 820  Q
    |||||    
T  11953789 ctaga 11953785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 5602263 - 5602170
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||| ||||||||||||||||    
T  5602263 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactaaattcaactagtgttccaaca 5602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 429 - 516
Target Start/End: Complemental strand, 39746760 - 39746674
Alignment:
Q  429 acatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  39746760 acatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 39746674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 31289455 - 31289547
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||| ||||||||||||||||    
T  31289455 atgtgggacatttttaagtcacacactcacactagttcttacattgtg-ttttcttatccaa-ttttctcactagattcaactagtgttccaaca 31289547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 11980934 - 11980881
Alignment:
Q  30 gaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 83  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||    
T  11980934 gaaccgtcaaccattccctagttgctatgttgtaaataatcatacgatacatat 11980881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 12179406 - 12179494
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||| ||| |||||||||||||||||    ||||||||||| |||||||||||| |||||||||||| | | |||| |||||||| |||||||||    
T  12179406 atgtaggatatttttaagtcacacac----actagttcttacattgtgtttttc-tatccaattttt-ttactagaattaactagggttccaaca 12179494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 10106741 - 10106835
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgt-gtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||||||||||||||  ||||||||||| ||| | ||  || |||| |  ||| |||||||| |||||| ||||||||||||||||    
T  10106741 atgtgggacatttttaagtcacacaaccacactagttcctatgtagtaattattctcaatcaa-ttttctcactagattgaactagtgttccaaca 10106835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 11954541 - 11954460
Alignment:
Q  191 ttaagtcagatgatagcaatggcgttgggatcaagtggtgtgcccaaaccccagttgacgttttgcaagaaacaatcccttc 272  Q
    |||||||||||||  |||| |||  | |||||||||| |||| |||||||||||||||||| |  ||||||  |||||||||    
T  11954541 ttaagtcagatgaatgcaacggcacttggatcaagtgttgtgtccaaaccccagttgacgtatcacaagaactaatcccttc 11954460  T

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Target: scaffold0132 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 422 - 517
Target Start/End: Complemental strand, 2514 - 2420
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  2514 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaacac 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 422 - 517
Target Start/End: Complemental strand, 10474 - 10380
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  10474 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaacac 10380  T

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Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 425 - 516
Target Start/End: Complemental strand, 28291932 - 28291842
Alignment:
Q  425 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  28291932 tgggacatttttaagtcacacgctcacactagttcttatattgtgtttttcttatccaa-ttttctaattagatttaactagtgttccaaca 28291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 422 - 517
Target Start/End: Original strand, 24529090 - 24529184
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 517  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  24529090 atgtaggatatttttaagtcacacactcacactagttcttatattatgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 24529184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 9973969 - 9974062
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  9973969 atgtgggacatttttaagtcacacactcacattagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 9974062  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 33227019 - 33227113
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgttttt-cttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  33227019 atgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttccttatccaa-ttttctcactagatttaactagtgttccaaca 33227113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 425 - 516
Target Start/End: Original strand, 7358037 - 7358127
Alignment:
Q  425 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||||  ||||| ||||||||||||||||    
T  7358037 tgggacatttttaagtcacacgctcacactagttcttgcattgtgtttttcttatccaa-ttttctcaaaagattcaactagtgttccaaca 7358127  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 457 - 516
Target Start/End: Original strand, 10437398 - 10437456
Alignment:
Q  457 ttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  10437398 ttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 10437456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 457 - 516
Target Start/End: Original strand, 10451108 - 10451166
Alignment:
Q  457 ttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  10451108 ttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 10451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 19478838 - 19478931
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  19478838 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 19478931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 422 - 485
Target Start/End: Complemental strand, 14450689 - 14450626
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatt 485  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14450689 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatt 14450626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 10485799 - 10485890
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||| ||||||||||||| |||||  ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  10485799 atgtggaacatttttaagtctcacac--acactagttcttacattgtgtttttct-atccaatttttctcactagatttaactagtattccaaca 10485890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 17289697 - 17289607
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  17289697 atgtgggacatttttaagtcacacac--acactagttcttacattgtgtttttc-tatccaa-ttttctcactagattcaactagtgttccaaca 17289607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 42915263 - 42915356
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  42915263 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 42915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 5089778 - 5089872
Alignment:
Q  422 atgtgggacattttt-aagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||| |||||||| || ||| |||||||||| |||||    
T  5089778 atgtgggacattttttaagtcccgcactcacactagttcttacattgtgtttttcttatccaa-ttttctcactaaattcaactagtgtttcaaca 5089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 39959865 - 39959952
Alignment:
Q  423 tgtgggacattttt-aagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||| |||||||||||    | ||||||||||||||| |||||| ||||||| |||  ||| |||||||||||| ||||||||||    
T  39959865 tgtgggacattttttaagtcacacac----aatagttcttatattgtatttttc-tatccaacttt--tcactagatttaactactgttccaaca 39959952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 10119899 - 10119806
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||| ||||||||||||||||    
T  10119899 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcacgagattcaactagtgttccaaca 10119806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 516
Target Start/End: Original strand, 24490797 - 24490882
Alignment:
Q  425 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||||| ||||||    ||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  24490797 tgggacatttttaagttacacac----actagttcttacattgtgtttttct-atccaatttt-ctcactagatttaactagtgttccaaca 24490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 653688 - 653782
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtg-tttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||| |  ||||||||||||||| | ||| || |||| |||||| |||||||| |||||| ||||||||||||||||    
T  653688 atgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattctcatccaa-ttttctcactagattaaactagtgttccaaca 653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 449 - 518
Target Start/End: Complemental strand, 8082837 - 8082771
Alignment:
Q  449 cacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacact 518  Q
    |||||||||||||| || |||||||||| |||||| ||||| |  |||| ||||||||||||||||||||    
T  8082837 cacactagttcttacatagtgtttttct-atccaacttttcac--tagaattaactagtgttccaacact 8082771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 2326 - 2420
Alignment:
Q  422 atgtgggacatttt-taagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| || ||||||||||||||||    
T  2326 atgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatccaa-ttttctcactaggttcaactagtgttccaaca 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 7580 - 7674
Alignment:
Q  422 atgtgggacatttt-taagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| || ||||||||||||||||    
T  7580 atgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatccaa-ttttctcactaggttcaactagtgttccaaca 7674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 13582075 - 13581981
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtg-tttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    ||||||||||||||||||||||| |  ||||||||||||||| | ||| || |||| |||||| |||||||| |||||| ||||||||||||||||    
T  13582075 atgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattctcatccaa-ttttctcactagattgaactagtgttccaaca 13581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 14374824 - 14374864
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttctta 462  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  14374824 atgtgggacatttttaagtcacacaaccacactagttctta 14374864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 459
Target Start/End: Original strand, 7805773 - 7805810
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttc 459  Q
    |||||||||||||||||||||||||  |||||||||||    
T  7805773 atgtgggacatttttaagtcacacaaccacactagttc 7805810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 33392 - 33305
Alignment:
Q  422 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 516  Q
    |||||||||||||||||||||||    |||||||||||||| |||||||||||| |||||||||||  ||| |||| ||||||||| ||||||||    
T  33392 atgtgggacatttttaagtcaca----cacactagttcttacattgtgtttttc-tatccaatttt--tcactagaattaactagtattccaaca 33305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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