View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16000_high_16 (Length: 226)
Name: NF16000_high_16
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16000_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 2460830 - 2460621
Alignment:
| Q |
1 |
catattaaattaattatatgaataatgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattcaaccaagccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460830 |
catattaaattaattatatgaataatgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattcaaccaagccttt |
2460731 |
T |
|
| Q |
101 |
actgttcatcaagaatccaagcactaaagactcgttgaaaggtactttacatagaagagacactacaatagtcccgacaatcttcccaaaacaagccgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460730 |
actgttcatcaagaatccaagcactaaagactcgttgaaaggtactttacatagaagagacactacaatagtcccgacaatcttcccaaaacaagccgta |
2460631 |
T |
|
| Q |
201 |
aatgtaacaa |
210 |
Q |
| |
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|||||||||| |
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| T |
2460630 |
aatgtaacaa |
2460621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2449813 - 2449605
Alignment:
| Q |
1 |
catattaaattaatt-atatgaataatgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattcaaccaagcctt |
99 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2449813 |
catattaaattaatttataggaataatgagagcaagaaaataaactcaaatacctttctatctttaccaatgttgaggacaattaattcaaccaagcctt |
2449714 |
T |
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| Q |
100 |
tactgttcatcaagaatccaagcactaaagactcgttgaaaggtactttacatagaagagacactacaatagtcccgacaatcttcccaaaacaagccgt |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
2449713 |
tactattcatcaagaatccaagcactaaagactcgttgaaaggtactttacatataagagacacaacaatagtcccaacaatcttcccaaaacaagccgt |
2449614 |
T |
|
| Q |
200 |
aaatgtaac |
208 |
Q |
| |
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||||||||| |
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| T |
2449613 |
aaatgtaac |
2449605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 2445034 - 2444849
Alignment:
| Q |
21 |
aataatgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattcaaccaagcctttactgttcatcaagaatccaa |
120 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2445034 |
aatagtgagagcaagaa----aattcaaatacctttcgatctttaccaatgttgaggacaattaattcaaccaagcctttactattcatcaagaatccaa |
2444939 |
T |
|
| Q |
121 |
gcactaaagactcgttgaaaggtactttacatagaagagacactacaatagtcccgacaatcttcccaaaacaagccgtaaatgtaacaa |
210 |
Q |
| |
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||||||||||||| || |||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||| |
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| T |
2444938 |
gcactaaagactcattaaaagacactttacataaaagagacacaacaatagtcccaacaatcttcccaaaacaagcagtaaatgtgacaa |
2444849 |
T |
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