View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16000_high_2 (Length: 540)
Name: NF16000_high_2
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16000_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 17 - 529
Target Start/End: Complemental strand, 4440928 - 4440416
Alignment:
| Q |
17 |
catcacatatgtttgcaaaattttctaagcgcacaccaattgaaatttgaacattttgtcgagctatctaaaacacatgagaccttaagctctacagtta |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440928 |
catcacatatgtttacaaaattttctaagcgcacaccaattgaaatttgaacattttgtcgagctatctaaaacacatgagaccttaagctctacagtta |
4440829 |
T |
|
| Q |
117 |
gcatatacaaaaaagtcaaagacacaccaattaggaagaatgcgtcatagatagagacaacatcctcatctaatcactagctgattgcacaccgccagta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440828 |
gcatatacaaaaaagtcaaagacacaccaattaggaagaatgcgtcatagatagagacaacatcctcatctaatcactagctgattgcacaccgccagta |
4440729 |
T |
|
| Q |
217 |
gaatcacctgatatcgttgttacaataccgtcactcaatttgtctatgttagtaggtgcacttataacaggcctgaatttgttgaatttaattagtctaa |
316 |
Q |
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||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4440728 |
gaaccacctgacatcgtttttacaataccgtcactcaatttgtctatgttagtaggtgcacttataacaggcctgaatttgttgaatttaatttgtctaa |
4440629 |
T |
|
| Q |
317 |
agaattagataggatgttaattgttcctggcacaatagcattggcaacaagagaagcaatagtcctacaaagttccaatagggtggagaaatgcattgct |
416 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4440628 |
agaattagataggatgttaattattcctggcacaatagcattggcaacaagagaagcaataatcctacaaagttccaatagggtggagaaatgcattgct |
4440529 |
T |
|
| Q |
417 |
ttccaatgttcctcaaatgattctcaaatgaagggacttgcctcctaagcatggcagtgtggtacatagaagttttctgctaatattgatgtgtttgtgg |
516 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440528 |
ttccaatgttcctcaaatgattctcaaatgaagggacttgcctcctaagcatggcagtgtggtacatagaagttttctgctaatattgatgtgtttgtgg |
4440429 |
T |
|
| Q |
517 |
tcgttcatctcac |
529 |
Q |
| |
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|||||||| |||| |
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| T |
4440428 |
tcgttcatgtcac |
4440416 |
T |
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