View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16000_high_3 (Length: 411)
Name: NF16000_high_3
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16000_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 38365151 - 38365528
Alignment:
| Q |
1 |
gatattatggtaccaggtggtgttactattaaagatgtttcagaagatattcgttgtgacaaaggtgatcgtgtgaggttcaaatctgatgttcttccat |
100 |
Q |
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| T |
38365151 |
gatattatggtaccaggtggtgttactattaaagatgtttcagaagatattcgttgtgacaaaggtgatcgtgtgaggtttaaatctgatgttcttcaat |
38365250 |
T |
|
| Q |
101 |
tcaatcaggtttgctcttcttttctcttttctaattattattatagtgacatgataatatgatatcattgatatggatagaaaattggcgtgtaaaagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38365251 |
tcaatcaggtttgctcttcttttctcttttctaattattattatagtgacatgataatatgatatcattgatatggatagaaaattggcgtgtaaaagta |
38365350 |
T |
|
| Q |
201 |
caaactatagaaagtgtttgtggacataagccaattaaataatccaaagagtatatcacaatacctaccactaacgtggaaatttagcatcctataatat |
300 |
Q |
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| T |
38365351 |
caaactatagaaagtgtttttggacataagccagttaaataatccaaagag--tatcacaatacctaccactaacgtggaaatttagcatcctataatat |
38365448 |
T |
|
| Q |
301 |
tcaatctaaaatctacgtcccaaagtagtatggaattattattatgatgttaacgattaagttggcagatactcaattttttcgagattaaatt |
394 |
Q |
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||||||||||||||||||| ||| | |||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
38365449 |
tcaatctaaaatctacgtcacaa--------------actattattatgttaacaattaagttggcagatactcaattttttcgagactaaatt |
38365528 |
T |
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