View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16000_high_4 (Length: 376)
Name: NF16000_high_4
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16000_high_4 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 100 - 358
Target Start/End: Original strand, 95527 - 95785
Alignment:
| Q |
100 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
95527 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaag |
95626 |
T |
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| Q |
200 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95627 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
95726 |
T |
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| Q |
300 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95727 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt |
95785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 100 - 358
Target Start/End: Original strand, 87511 - 87769
Alignment:
| Q |
100 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
199 |
Q |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
87511 |
tgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaag |
87610 |
T |
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| Q |
200 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
299 |
Q |
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| T |
87611 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
87710 |
T |
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| Q |
300 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt |
358 |
Q |
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| T |
87711 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt |
87769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 87405 - 87474
Alignment:
| Q |
30 |
gagtgtggaccctcagctatggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
99 |
Q |
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| T |
87405 |
gagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacag |
87474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 95440 - 95490
Alignment:
| Q |
49 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
99 |
Q |
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| T |
95440 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
95490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 100 - 358
Target Start/End: Complemental strand, 40870755 - 40870497
Alignment:
| Q |
100 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40870755 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaag |
40870656 |
T |
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| Q |
200 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
299 |
Q |
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| T |
40870655 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
40870556 |
T |
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| Q |
300 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt |
358 |
Q |
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| T |
40870555 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt |
40870497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 100 - 358
Target Start/End: Complemental strand, 40878772 - 40878514
Alignment:
| Q |
100 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
199 |
Q |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
40878772 |
tgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaag |
40878673 |
T |
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| Q |
200 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
299 |
Q |
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| T |
40878672 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
40878573 |
T |
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| Q |
300 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt |
358 |
Q |
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| T |
40878572 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttctt |
40878514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 40878878 - 40878809
Alignment:
| Q |
30 |
gagtgtggaccctcagctatggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
99 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
40878878 |
gagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacag |
40878809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 40870842 - 40870792
Alignment:
| Q |
49 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870842 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
40870792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
303 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
357 |
Q |
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||||||||| || || ||||| ||||||||||||||||||||||| || |||||| |
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| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 40352777 - 40352733
Alignment:
| Q |
303 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtgg |
347 |
Q |
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||||||||| || || |||||||| |||||||||||||||||||| |
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| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtgg |
40352733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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