View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16000_low_10 (Length: 298)
Name: NF16000_low_10
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16000_low_10 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 28290 - 28538
Alignment:
| Q |
19 |
tcacctacataatatgtacttttataccattgatgttgatgcagccacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatt |
118 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290 |
tcacctacataatatgaacttttatatcattgatgttgatgcagccacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatt |
28389 |
T |
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| Q |
119 |
tcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattc |
218 |
Q |
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| T |
28390 |
tcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatg--------------ttaagaagtttgataaaataataaattc |
28475 |
T |
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| Q |
219 |
caacctttttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28476 |
caacctttttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattc |
28538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 26396004 - 26396252
Alignment:
| Q |
19 |
tcacctacataatatgtacttttataccattgatgttgatgcagccacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatt |
118 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396004 |
tcacctacataatatgaacttttataccattgatattgatgcagcgacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatt |
26396103 |
T |
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| Q |
119 |
tcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattc |
218 |
Q |
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| T |
26396104 |
tcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatg--------------ttaagaagtttgataaaataataaattc |
26396189 |
T |
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| Q |
219 |
caacctttttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattc |
281 |
Q |
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| T |
26396190 |
caacctttttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattc |
26396252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 65 - 281
Target Start/End: Original strand, 275446 - 275648
Alignment:
| Q |
65 |
acaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgtta |
164 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275446 |
acaacttcatcagcgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgtta |
275545 |
T |
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| Q |
165 |
aataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttc |
264 |
Q |
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| T |
275546 |
aataataatatg--------------ttaagaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttc |
275631 |
T |
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| Q |
265 |
aatgccgctctttattc |
281 |
Q |
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||||||||||||||||| |
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| T |
275632 |
aatgccgctctttattc |
275648 |
T |
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