View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16000_low_12 (Length: 263)
Name: NF16000_low_12
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16000_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 121 - 249
Target Start/End: Complemental strand, 10970639 - 10970508
Alignment:
| Q |
121 |
tgaacaacgaaagagacatca---ctctttaatagtttttcctggaatggaatgaattattacccacgttcatcgcgaggaatataaaaaatgttattta |
217 |
Q |
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| T |
10970639 |
tgaacaacgaaagagacatcatcactctttaatagtttttcctggaatggaatgaattattacccacgttcatcgcgaggaatataaaaaatgttattta |
10970540 |
T |
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| Q |
218 |
aagtactatttcatctttttgtccctacctcc |
249 |
Q |
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| T |
10970539 |
aagtactatttcatctttttgtccctacctcc |
10970508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 10970787 - 10970683
Alignment:
| Q |
20 |
ggattgttttgagaacactccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataataaactacgtgaaataagagccattttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10970787 |
ggattgttttgagaacactccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataataaactacgtgaaataagagccattttg |
10970688 |
T |
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| Q |
120 |
atgaa |
124 |
Q |
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||||| |
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| T |
10970687 |
atgaa |
10970683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 30509820 - 30509924
Alignment:
| Q |
20 |
ggattgttttgagaacactccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataataaactacgtgaaataagagccattttg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30509820 |
ggattgttttgagaacactccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataatgaactacgtgaaataagagccattttg |
30509919 |
T |
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| Q |
120 |
atgaa |
124 |
Q |
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||||| |
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| T |
30509920 |
atgaa |
30509924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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