View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16000_low_13 (Length: 239)
Name: NF16000_low_13
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16000_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 1215561 - 1215350
Alignment:
| Q |
13 |
caaaggtgcacctacatataccgatcatacatgcatacacgtatatgcgcatacattaacagatataaatagccaaacaaacatctataaaattaaacac |
112 |
Q |
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| T |
1215561 |
caaaggtgcacctacatataccgatcatacatgcatacacatatatgcgcatacattaacagatataaatagccaaacaaacatctataaaattaaacac |
1215462 |
T |
|
| Q |
113 |
--atatggttacaaaaaatataaacctaagacaagtgttcgcgtgggaaaataaagaatcatttcaaggctttaattttcgnnnnnnnnncaaggtcttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
1215461 |
atatatggttacaaaaaatataaacctaagacaagtgttcgcgtggggaaataaagaatcatttcaaggctttaatttttgaaaaaaaatcaaggtcttt |
1215362 |
T |
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| Q |
211 |
caatgtcttcat |
222 |
Q |
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|||||||||||| |
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| T |
1215361 |
caatgtcttcat |
1215350 |
T |
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