View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16000_low_14 (Length: 237)
Name: NF16000_low_14
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16000_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 23046130 - 23046334
Alignment:
| Q |
16 |
atgaacaagtttggtcatgtgttttgcattcgtaaaataaaacatttctcattctaaacataaagatagtaaattaaaaaagatggaaacataataaata |
115 |
Q |
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| T |
23046130 |
atgaacaagtttggtcatgtgttttgcattcgtaaaataaaacatttctcattctaaacataaagatagtaaattaaaaaagatggaaacataataaata |
23046229 |
T |
|
| Q |
116 |
catttatatgctacaatctcatagagcatgatgattgaaaactgaaaaggtacctgcagctccagattctgaattatttccacttgcagcattcttgttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23046230 |
catttatatgctacaatctcatagagcatgatgattgaaaactgaaaaggtacctgcagctccagattctgaattatttccacttgcagcattcttgttt |
23046329 |
T |
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| Q |
216 |
ttcct |
220 |
Q |
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||||| |
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| T |
23046330 |
ttcct |
23046334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 22514219 - 22514281
Alignment:
| Q |
158 |
tgaaaaggtacctgcagctccagattctgaattatttccacttgcagcattcttgtttttcct |
220 |
Q |
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| T |
22514219 |
tgaaatggtacctgcagctccagattctgaattatctccacttgcagcattcttctttttcct |
22514281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 22512812 - 22512750
Alignment:
| Q |
158 |
tgaaaaggtacctgcagctccagattctgaattatttccacttgcagcattcttgtttttcct |
220 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
22512812 |
tgaaaaggtacctgctgctccagattctgaattatctccacttgctgcattcttctttttcct |
22512750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 22514101 - 22514152
Alignment:
| Q |
16 |
atgaacaagtttggtcatgtgttttgcattcgtaaaataaaacatttctcat |
67 |
Q |
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|||||||||||||||||| ||||| ||||||||| ||| |||||||||||| |
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| T |
22514101 |
atgaacaagtttggtcatatgtttcacattcgtaatatacaacatttctcat |
22514152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 22512860 - 22512815
Alignment:
| Q |
76 |
taaagatagtaaattaaaaaagatggaaacataataaatacattta |
121 |
Q |
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|||| ||||||||||||||||| |||||||| ||||||||||||| |
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| T |
22512860 |
taaacatagtaaattaaaaaaggtggaaacaacataaatacattta |
22512815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 9494597 - 9494542
Alignment:
| Q |
165 |
gtacctgcagctccagattctgaattatttccacttgcagcattcttgtttttcct |
220 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||| |
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| T |
9494597 |
gtacctgcaactccagattctgaattatctccacttgcagcattcttctttctcct |
9494542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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