View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16000_low_5 (Length: 374)
Name: NF16000_low_5
Description: NF16000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16000_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 24827346 - 24827695
Alignment:
| Q |
5 |
tgtccaagaatatagtaagcatctttttatattttccttgtcaacttcgtccaaatcnnnnnnnnttccagcggtgttaccatatgagtggtttcatttt |
104 |
Q |
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| T |
24827346 |
tgtccaatactatagtaagcatctttttatattttccttgtcaacttcgtccaaatcaaaaaaaattccagcggtgttaccatatgagtggtttcatttt |
24827445 |
T |
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| Q |
105 |
ccttgttataactttgcaataatattaattttcttaatagtnnnnnnngttggattaagctgatacaataccatgttaacctcaaaattttcatttttaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24827446 |
ccttgttataactttgcaataatattaattttcttaatagtaaaaaaagttggattaagctgatacaataccatgttaacctcaaaattttcatttttaa |
24827545 |
T |
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| Q |
205 |
accttttatagtaggtccatattagagctagaatcaccctagaaagnnnnnnnnntatgattatgattctattgacacaacttgattggttccaaatctc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24827546 |
accttttatagtaggtccatattagagctagaatcaccctagaaagaaaaaaaaatatgattatgattctattgacacaacttgattggttccaaatctc |
24827645 |
T |
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| Q |
305 |
atgttttaagaaattttatgtaacatcatcatgagcttggtctttgacataac |
357 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24827646 |
atgttttaagaaattttatgtaa---catcatgagcttggtctttgacataac |
24827695 |
T |
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