View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16001_high_1 (Length: 477)
Name: NF16001_high_1
Description: NF16001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16001_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 23 - 458
Target Start/End: Original strand, 55300640 - 55301075
Alignment:
| Q |
23 |
actcatgattttgttgtctttttaagtccagaagatcaatcactcatggcaacagaaccagaagcaactttggaggaggcgatggtgttgatccatcccg |
122 |
Q |
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| T |
55300640 |
actcatgattttgttgtctttttaagtccagaagatcaatcactcatggtaacagaaccagaagcaactttggaggaggcgatggtgttgatccatcccg |
55300739 |
T |
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| Q |
123 |
atatccaagggaagcctttgagggttaacaatccgtcatcatcacaagcaactttggagaagatggacgacggtagtgacgatgttgaaggcgggaagcc |
222 |
Q |
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| T |
55300740 |
atatccaagggaagcctttgagggttaacaatccgtcatcatcacaagcaactttggagaagatggacgacggtagtgacgatgttgaaggcgggaagcc |
55300839 |
T |
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| Q |
223 |
tttgagggttaattatgaatcagaaactattccagagaaaacaattttgtgtgacgatgttgtgttgttggttgaagagcataagagaaagcatttgagg |
322 |
Q |
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| T |
55300840 |
tttgagggttaattatgaatcagaaactattccagagaaaacaattttgtgtgacgatgttgtgttgttggttgaagagcataagagaaagcctttgagg |
55300939 |
T |
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| Q |
323 |
gagagagtaacatcaaattcggagacagtattgtcacaacaagaaaatgctgacaaaacagatttgggtatggaggaggagatggaattggtgatgattg |
422 |
Q |
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| T |
55300940 |
gagagagtaacatcaaattcggagacagtattgtcacaacaagaaaatgctgacaaaacagatttgggtatggaggaggagatggaattggtgatgattg |
55301039 |
T |
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| Q |
423 |
aacaagagaagccattgagagagagtcgtgcgtcac |
458 |
Q |
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| T |
55301040 |
aacaagagaagccattgagagagagtcgtgcgtcac |
55301075 |
T |
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