View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16001_high_2 (Length: 421)
Name: NF16001_high_2
Description: NF16001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16001_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 40225844 - 40226243
Alignment:
| Q |
19 |
agagtggtgcaagaaactcaaaatcataacctctgcaagaaattccctgcttccttgaaatccatccttgttaagtttctttacagcaacaacctgcata |
118 |
Q |
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| T |
40225844 |
agagtggtgcaagaaactcaaaatcataacctctgcaagaaattccctgcttccttgaaatccatccttgttaagtttcttaacagcaacaacctgcata |
40225943 |
T |
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| Q |
119 |
tagtataagtaacacaacattgataagttcacttactatatgcgttttaaaaattgaacaaggcggtttaaccggttgaaccttgaattggcacttcgat |
218 |
Q |
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| T |
40225944 |
tagtataagtaacacaacattgacaagttcgcttactatatgcgttttaaaaattgaacaagacggtttaaccggttgaaccttgaattggcactttgat |
40226043 |
T |
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| Q |
219 |
caaggttttatccccatt-----caaaccgtttaagacggttgaaatatgatccagaggtcttgccggtttgatgttcaattgggttcaatatttaaaac |
313 |
Q |
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| T |
40226044 |
caaagttttatccccattcaaaccaaaccgtttaagacggttgaaatatgatccagaagtcttgccggtttgatgttcaatttggttcaatttttaaaac |
40226143 |
T |
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| Q |
314 |
attgcttacaaattgaataactt--ttagcataatattcaaataactcctagtaaaagtaatattataccttattatttatgcttttaatgcgccctttg |
411 |
Q |
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| T |
40226144 |
attgcttacaaattgaataactttgttagcataatattcaaataactcctagcataagtaatattataccttattatttatgcttttaatgcgccctttg |
40226243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 19994761 - 19994854
Alignment:
| Q |
23 |
tggtgcaagaaactcaaaatcataacctctgcaagaaattccctgcttccttgaaatccatccttgttaagtttctttacagcaacaacctgca |
116 |
Q |
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| T |
19994761 |
tggtgcaaaagactcaaaatcaaaacctctacaaggaattctctgttcccttgaaatccatttctgtcaagtgccttcacagcaacaatctgca |
19994854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 19998995 - 19999044
Alignment:
| Q |
34 |
actcaaaatcataacctctgcaagaaattccctgcttccttgaaatccat |
83 |
Q |
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| T |
19998995 |
actcaaaatcaaaacctctacaagaaactccctgttcccttgaaatccat |
19999044 |
T |
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