View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16001_low_5 (Length: 234)
Name: NF16001_low_5
Description: NF16001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16001_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 29894438 - 29894276
Alignment:
| Q |
1 |
tctccttgtcatcgttgcagtcacggtgttctgaactgagctcttgacctacttttcaattaaacacnnnnnnncttcatataggtgagataacaaactt |
100 |
Q |
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| T |
29894438 |
tctccttgtcatccttgcagtcactgtgttctgaacggagctcttgacctacttttcaattaaacacttttttacttcatataggtgagataac-aactt |
29894340 |
T |
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| Q |
101 |
gcgagagnnnnnnnccaaaataagcta-actaccgtcacaacataatcacttgtgagaggttttt |
164 |
Q |
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||||||| ||||||||||||| ||||| ||||||||| ||||||| ||||||| ||||| |
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| T |
29894339 |
gcgagag-ttttttccaaaataagctatactacggtcacaacagaatcactcgtgagagtttttt |
29894276 |
T |
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