View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16001_low_6 (Length: 214)
Name: NF16001_low_6
Description: NF16001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16001_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 2898739 - 2898901
Alignment:
| Q |
18 |
atagtgtaattttgtttacatcacagtgtattagaattaaactctaaaagaaaacaagcttgtaacttctgttttgaactcacttctggacataatgaag |
117 |
Q |
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| T |
2898739 |
atagtgtaattttgtttacatcacagtgtattagaattaaactctaaaagaaaacaagcttgtaacttctgttttgaactcacttctggacataatgaag |
2898838 |
T |
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| Q |
118 |
ccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgttt |
180 |
Q |
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| T |
2898839 |
ccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgttt |
2898901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 2885625 - 2885512
Alignment:
| Q |
69 |
aaacaagcttgtaacttctgtt--ttgaactcacttctggacataatgaagccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttgg |
166 |
Q |
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| T |
2885625 |
aaacaagcttgtaatttcggttatttgaactcacttctggacataacgaagccacctaatgtaagaagtgcgagaagtgcaaaggacccaaatgtattgg |
2885526 |
T |
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| Q |
167 |
ccacaatcatgttt |
180 |
Q |
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| T |
2885525 |
ccacaatcatgttt |
2885512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 44235164 - 44235250
Alignment:
| Q |
94 |
aactcacttctggacataatgaagccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgttt |
180 |
Q |
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| T |
44235164 |
aacttacttcttgagagaatgaagccacccaatgcaagaagtgtgagaactgcaaaggacccaaatgtattggcaacaatcatgttt |
44235250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 44212183 - 44212269
Alignment:
| Q |
94 |
aactcacttctggacataatgaagccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgttt |
180 |
Q |
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| T |
44212183 |
aacttacttcttgagagaatgaagccacccaatgcaaaaagtgtgagaactgcaaaggacccaaatgtattggcaacaatcatgttt |
44212269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 44224349 - 44224435
Alignment:
| Q |
94 |
aactcacttctggacataatgaagccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgttt |
180 |
Q |
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| T |
44224349 |
aacttacttcttgagagaatgaagccacccaatgacagaaatgtgagaagtgcaaaggacccaaatgtattggcaacaatcatgttt |
44224435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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