View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16001_low_7 (Length: 207)
Name: NF16001_low_7
Description: NF16001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16001_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 8100911 - 8101057
Alignment:
| Q |
18 |
agagagagatgagaagaaataatgttatgtttttctgaaaaaatgagaataataataataccccttttatagacaaggatattaaacctagtccaagaca |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8100911 |
agagagagatgagaagaattaatgttatgtttttctgaaaaaatgagaata---ataataccccttttatagacaaggatattaaacctagtccaagaca |
8101007 |
T |
|
| Q |
118 |
aggacattaaacggtcgtcgtttccttttatttacattgtcgtttcactc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8101008 |
aggacattaaacggtcgtcgtttccttttatttacattgtcgtttcactc |
8101057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 8099964 - 8099890
Alignment:
| Q |
18 |
agagagagatgagaagaaataatgttatgtttttctgaaaaaatgagaataataataataccccttttatagacaa |
93 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8099964 |
agagagagatgagaagaattaatgttatgtttttctgaaaaaatg-gaataataataataccccttttatagacaa |
8099890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University