View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16002_high_3 (Length: 334)
Name: NF16002_high_3
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16002_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 48456201 - 48455865
Alignment:
| Q |
1 |
tatagattttgtcatggcaaacttcctcaaactcaaacagttcctaactttagtattaattctcttagccctagccgccaaaagttccacaagcacaaca |
100 |
Q |
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| T |
48456201 |
tatagattttgtcatggcaaacttcctcaaactcaaacagttcctaactttagtattaattctcttagccctagccgccaaaagttccaaaagcacacca |
48456102 |
T |
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| Q |
101 |
tcaccatcatcaactacacgtgtgaaaggcatatactggatagaaaacccacttttccctccagcttccatagatacatcacttttcactcacattttct |
200 |
Q |
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| T |
48456101 |
tcaccatcatcaaccacacgtgtgaaaggcatatactggatagaaaacccacttttccctccatcttccatagatacatcacttttcactcacattttct |
48456002 |
T |
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| Q |
201 |
acgcttttgtttcacccaacaaattcacttataagctagaagaagaag---aagattcaacaactgtagccacctccctcactactttcaccaacacttt |
297 |
Q |
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| T |
48456001 |
acgcttttgtttcacccaacaaattcacttataagctagaagaagaagaagaagattcaacaactgtagccacctccctcactactttcaccaacacttt |
48455902 |
T |
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| Q |
298 |
caaaactaaaacccctcccattcctaccctcctttcc |
334 |
Q |
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| T |
48455901 |
caaaactaaaacccctcccattcctaccctcctttcc |
48455865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 48461637 - 48461444
Alignment:
| Q |
3 |
tagattttgtcatggcaaacttcctcaaactcaaacagttcctaactttagtattaattctcttagccctagccgccaaaagttccacaagcacaacatc |
102 |
Q |
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| T |
48461637 |
tagattttgtcatggctaacatcctcaacctgaaacatttactcactttagcattaattctcttagccctagccaccaaaagttc------cacatcatc |
48461544 |
T |
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| Q |
103 |
accatcatcaactacacgtgtgaaaggcatatactggatagaaaacccacttttccctccagcttccatagatacatcacttttcactcacattttctac |
202 |
Q |
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| T |
48461543 |
atcatcatcaatcacacgtgtgaaaggtatttactggttagaaaatccatttttccctccaactacagtagacacatcactctttactcacatcttctac |
48461444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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