View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16002_low_10 (Length: 296)
Name: NF16002_low_10
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16002_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 36394194 - 36394459
Alignment:
| Q |
18 |
gagaatggacgcagctctcgacgctatgattccgtttggttttcctaacaaactcgttcgtcaaaccgttgatcaattgctcaaagtaatgtttcgnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36394194 |
gagaatggacgcagctctcgacgctatgattccgtttggttttcctaacaaactcgttcgtcaaaccgttgatcaattgctcaaagtaatgtttcgtttt |
36394293 |
T |
|
| Q |
118 |
nnnctccatttaatcatcattaatattattaccttctaatttcgttaattaataataatgcttaat-----ttgtgtttaggtttatgacggtagttggg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36394294 |
tttctccatttaatcatcattaatattattacgttctaatttcgttaattaataataatgcttaatttgtgttgtgtttaggtttatgacggtagttggg |
36394393 |
T |
|
| Q |
213 |
ttttcattgaagaacattcttatactcttctcattgatactcttcttgaaaaacaacagaatcaga |
278 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36394394 |
ttttcattgaagaacatgcttatactcttctcattgatactcttcttgaaaaacaacagaatcaga |
36394459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 10787122 - 10787061
Alignment:
| Q |
26 |
acgcagctctcgacgctatgattccgtttggttttcctaacaaactcgttcgtcaaaccgtt |
87 |
Q |
| |
|
|||||||||||||||| |||| ||| || |||||| ||| |||||||||| |||||||||| |
|
|
| T |
10787122 |
acgcagctctcgacgccatgactcctttaggttttgataaaaaactcgttcatcaaaccgtt |
10787061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University