View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16002_low_11 (Length: 290)
Name: NF16002_low_11
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16002_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 43860156 - 43859883
Alignment:
| Q |
17 |
cacaattggagtaggacattgcaacttattcagcaacaggcttttcaacttcactggaaaaggtgatcaagatccatctctgaatccaacttatgcaaat |
116 |
Q |
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| T |
43860156 |
cacaattggagtaggacattgcaacttattcagcaacaggcttttcaacttcactggaaaaggtgatcaagatccatctctaaatccaacttacgcaaat |
43860057 |
T |
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| Q |
117 |
ttcttgaagaccaaatgccaaggcctaagtgacaccactacaacagtcgaaatggatcctaatagctcaacaacatttgacaatgactattatcctgtcc |
216 |
Q |
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| T |
43860056 |
ttcttgaagaccaaatgccaaggcctaagtgacaccactacaacagtcgaaatggatcctaatagctcaacaacatttgacaatgactattatcctgtcc |
43859957 |
T |
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| Q |
217 |
ttctacaaaacaagggtctcttcacatcagacgctgctcttctaacaaccaagcagtctagaaacattattaat |
290 |
Q |
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| T |
43859956 |
ttctacaaaacaagggtctcttcacatcagacgctgctcttctaacaaccaagcagtctagaaacattgttaat |
43859883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 43858328 - 43858212
Alignment:
| Q |
174 |
cctaatagctcaacaacatttgacaatgactattatcctgtccttctacaaaacaagggtctcttcacatcagacgctgctcttctaacaaccaagcagt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43858328 |
cctaatagctcaacaacatttgacaatgactattatcctgtccttctacaaaacaagggtctcttcacatcagacgctgctcttctaacaaccaagcagt |
43858229 |
T |
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| Q |
274 |
ctagaaacattattaat |
290 |
Q |
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| T |
43858228 |
ctaaaaacattgttaat |
43858212 |
T |
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