View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16002_low_12 (Length: 267)
Name: NF16002_low_12
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16002_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 43638622 - 43638447
Alignment:
| Q |
5 |
accgatctaaaaagtgtcaaaccacacttaggtaccgttttgtagccaacatcagttaactgcctcactcaaccaactgtagttgcattttttagcaatt |
104 |
Q |
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| T |
43638622 |
accgatctaaaaagtgtcaaacgacacttaggtaccgttttgtagccaacatcagtcaactgcctcactcaaccaactgtagttgcattttttagcaatt |
43638523 |
T |
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| Q |
105 |
agagggtgcctaaagagtaactttctaaatttaacatatacaagttggagtccctgattttttaatagaaattaga |
180 |
Q |
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| T |
43638522 |
agagggtgcctaaagagtaactttctaaatttaacatatacaagttggagtccctgattttttaatagaaattaga |
43638447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 43638423 - 43638352
Alignment:
| Q |
181 |
ttaatactctattttgttgcttatggccaggttctagagatgctgtctgaggaatatggtggtcgagttgag |
252 |
Q |
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| T |
43638423 |
ttaatactctattttgttgcttatggccaggttctagagatgctgtctgaggaatatggtggtcgagttgag |
43638352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 4926747 - 4926795
Alignment:
| Q |
73 |
tcaaccaactgtagttgcattttttagcaattagagggtgcctaaagag |
121 |
Q |
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| T |
4926747 |
tcaacaaactgtaattgcatttttgagcaagtatagggtgcctaaagag |
4926795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 5904331 - 5904288
Alignment:
| Q |
84 |
tagttgcattttt-tagcaattagagggtgcctaaagagtaact |
126 |
Q |
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| T |
5904331 |
tagttgcatttttctagcaattagagggtgcctaaagagtaact |
5904288 |
T |
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