View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16002_low_13 (Length: 250)
Name: NF16002_low_13
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16002_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 43638685 - 43638861
Alignment:
| Q |
59 |
ggtattttcctcgattcaaaatgcatgagagcaaatggtgatgcttaaagagaagctttcttaaatttaaatgaagtccaaataatagctagttttgtat |
158 |
Q |
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| T |
43638685 |
ggtattttcctcaattcaaaatgcatgagagcaaatggtgatgcttaaagagaagctttcttaaatttaaatgaagcccaaataatagctagttttgtat |
43638784 |
T |
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| Q |
159 |
aaatacaagagatcatatataccaattaaagagatactttctaaatttaattggtatatacttggttcatatataat |
235 |
Q |
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| T |
43638785 |
aaacacaagagatcatatataccaattaaagagatactttctaaatttaattggtatatacttggttcatatataat |
43638861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43638609 - 43638658
Alignment:
| Q |
1 |
ctttttagatcggtacaatta-tttttaaatcggttaatcaatttaaaaa |
49 |
Q |
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| T |
43638609 |
ctttttagatcggtccaattaatttttaaatcggttaatcaatttaaaaa |
43638658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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