View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16002_low_14 (Length: 227)
Name: NF16002_low_14
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16002_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31695638 - 31695854
Alignment:
| Q |
1 |
cacgacattgacacattgacatatatagtaattagcttataaaaacaccgatagtaatctaaaaactgacacaattacatgtaattacatgggttgtgga |
100 |
Q |
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| T |
31695638 |
cacgacattgacacattgacatctatagtaaatagcatataagaaaaccaatagtaatctaaaaaatgaca----------taattacatgggtcgtgga |
31695727 |
T |
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| Q |
101 |
caccaaacctatttttaaacacttctttgatcaaaagtgtcgttgctacataaatcacatggaaaaatgtggttgtttaagttgaatagatagtcaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31695728 |
caccaaacctatttttaaacacttctttgatcaaaagtgtcgttgctacataaatcacatggaaaaatgtggttgtttaagttgaatagatagtcaattt |
31695827 |
T |
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| Q |
201 |
aaacccgttgaaaaatgtgaaattgtg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31695828 |
aaacccgttgaaaaatgtgaaattgtg |
31695854 |
T |
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