View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16002_low_2 (Length: 524)
Name: NF16002_low_2
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16002_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 12 - 524
Target Start/End: Complemental strand, 43640245 - 43639733
Alignment:
| Q |
12 |
caaaggcaatgacatagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggt |
111 |
Q |
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| T |
43640245 |
caaaggcaatgacatagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggt |
43640146 |
T |
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| Q |
112 |
tctttcagagcttgtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacat |
211 |
Q |
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| T |
43640145 |
tctttcagagcttgtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacat |
43640046 |
T |
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| Q |
212 |
gtttatacattcatgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaa |
311 |
Q |
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| T |
43640045 |
gtttatacattcatgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaa |
43639946 |
T |
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| Q |
312 |
aacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtagaccctcaaggagtgaaagaaggtgttaagggttta |
411 |
Q |
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| T |
43639945 |
aacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtggaccctcaaggagtgaaagaaggtgttaagggttta |
43639846 |
T |
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| Q |
412 |
gtagaaggtgggtgtcctccaagttttgtaatcattgatgatggttggcaaaacttttgtcgtgatgatgaagattgtttgaacggtggtgattgtttaa |
511 |
Q |
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| T |
43639845 |
gtagaaggtgggtgtcctccaagttttgtaatcattgatgatggttggcaaaatttttgtcgtgatgatgaagattttttgaacggtggtgattgtttaa |
43639746 |
T |
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| Q |
512 |
gtttgaattgttc |
524 |
Q |
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| T |
43639745 |
gtttgaattgttc |
43639733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 298 - 462
Target Start/End: Original strand, 486412 - 486576
Alignment:
| Q |
298 |
cttctagaagaaaaaacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtagaccctcaaggagtgaaagaag |
397 |
Q |
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| T |
486412 |
cttctagaagaaaaaactgtccccggaatagtggataaatttggatggtgtacatgggatgcattttatcttaaggtacaccctcaaggagtttgggaag |
486511 |
T |
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| Q |
398 |
gtgttaagggtttagtagaaggtgggtgtcctccaagttttgtaatcattgatgatggttggcaa |
462 |
Q |
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| T |
486512 |
gtgttaaggatttatctgatggtggttgtccacctggctttgtcttgattgatgatggttggcaa |
486576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 36432444 - 36432407
Alignment:
| Q |
328 |
gttgataaatttggatggtgtacatgggatgcatttta |
365 |
Q |
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| T |
36432444 |
gttgataaatttggttggtgtacatgggatgcttttta |
36432407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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