View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16002_low_3 (Length: 361)
Name: NF16002_low_3
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16002_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 346
Target Start/End: Complemental strand, 49028410 - 49028079
Alignment:
| Q |
15 |
tatccttcattctttcgtcgacatgtggtgccttgcaagtttctatggaacgatctggtggattttggtgacggtacgcagttgccgacgtttttggaag |
114 |
Q |
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| T |
49028410 |
tatccttcattctttcgtcgacatgtggtgccttgcaagtttctatggaacgatctggtggattttggtgacggtacgcagttgccgacgtttttggaag |
49028311 |
T |
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| Q |
115 |
ggtttagtatcaatattacaagatccggtggcgttttgattcttaacggcgtgccggtattctttccggatgtgttcttcaatgataggcttgttgttca |
214 |
Q |
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| T |
49028310 |
ggtttagtatcaatattacaagatccggtggcgttttgattcttaacggcgtgccggtattctttccggatgtgttcttcaatgataggcttgttgttca |
49028211 |
T |
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| Q |
215 |
tggtgtgactgatgttcttgccaatgcagtgcaagatgatactagtgcagttgtggatcctgctgtttcctccgatggagatcagaatctgtttgatcct |
314 |
Q |
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| T |
49028210 |
tggtgtgactgatgttcttgccaatgcagtgcaagatgatactagtgcagttgtggatcctgctgtttcctccgatggagatcagaatctgtttgatcct |
49028111 |
T |
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| Q |
315 |
ggtgaattttgaagttgtttccaagtgctcct |
346 |
Q |
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| T |
49028110 |
ggtgaattttgaagttgtttccaagtgctcct |
49028079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 331
Target Start/End: Complemental strand, 32803648 - 32803559
Alignment:
| Q |
236 |
caatgcagtgcaagatgatactagtgcagttgtggatcctgctgtttcctccgatggagatcagaatctgtttgatcctggtgaattttgaagttg |
331 |
Q |
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| T |
32803648 |
caatgtagtgcaagataatgctagtgtagttgtggat------gttttctcggatgaagatcagaatctttttgatcctggtgaattatgaagttg |
32803559 |
T |
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