View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16002_low_4 (Length: 360)
Name: NF16002_low_4
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16002_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 7374726 - 7375059
Alignment:
| Q |
11 |
agaacctgtgaagatgatgaaaaatgagcaaaaagagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttc |
110 |
Q |
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| T |
7374726 |
agaaactgtgaagatgatgaaaaaggagcaaaaagagaggataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtattt |
7374825 |
T |
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| Q |
111 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
210 |
Q |
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| T |
7374826 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
7374925 |
T |
|
| Q |
211 |
aagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaat |
310 |
Q |
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| T |
7374926 |
aagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaat |
7375025 |
T |
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| Q |
311 |
tgaagctttggtgaatgaggatggcgaggtgaat |
344 |
Q |
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| T |
7375026 |
tgaagctttggtgaatgaggatggcgaggtgaat |
7375059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 7279113 - 7278780
Alignment:
| Q |
11 |
agaacctgtgaagatgatgaaaaatgagcaaaaagagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttc |
110 |
Q |
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| T |
7279113 |
agaaactgtgaagatgatgaaaaaggagcaaaaagagaggataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtattt |
7279014 |
T |
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| Q |
111 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
210 |
Q |
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| T |
7279013 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
7278914 |
T |
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| Q |
211 |
aagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaat |
310 |
Q |
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| T |
7278913 |
aagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaat |
7278814 |
T |
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| Q |
311 |
tgaagctttggtgaatgaggatggcgaggtgaat |
344 |
Q |
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| T |
7278813 |
tgaagctttggtgaatgaggatggtgaggtgaat |
7278780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 7278783 - 7278700
Alignment:
| Q |
251 |
gaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatgg |
334 |
Q |
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| T |
7278783 |
gaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatgg |
7278700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 7375056 - 7375139
Alignment:
| Q |
251 |
gaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatgg |
334 |
Q |
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| T |
7375056 |
gaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatgg |
7375139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 7278576 - 7278520
Alignment:
| Q |
275 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
331 |
Q |
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| T |
7278576 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7278520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 7375263 - 7375319
Alignment:
| Q |
275 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
331 |
Q |
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| T |
7375263 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7375319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 5848125 - 5848215
Alignment:
| Q |
11 |
agaacctgtgaagatgatgaaaaatgagcaaaaagagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgtta |
102 |
Q |
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| T |
5848125 |
agaaactgtgaagatgatgaaaag-gagcaaaaagagaggataaggatcactaaaaccatcatgaatttgcttcttaggttggattctgtta |
5848215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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