View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16002_low_9 (Length: 313)

Name: NF16002_low_9
Description: NF16002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16002_low_9
NF16002_low_9
[»] chr2 (13 HSPs)
chr2 (13-284)||(3103331-3103602)
chr2 (193-256)||(5461159-5461221)
chr2 (192-235)||(10090832-10090875)
chr2 (172-249)||(18512109-18512187)
chr2 (198-256)||(44013876-44013934)
chr2 (222-263)||(9155998-9156039)
chr2 (198-263)||(16742875-16742939)
chr2 (215-256)||(41508543-41508584)
chr2 (212-276)||(1527864-1527928)
chr2 (199-255)||(18570980-18571036)
chr2 (205-256)||(29931740-29931792)
chr2 (220-272)||(33498619-33498671)
chr2 (211-255)||(44605146-44605190)
[»] chr8 (11 HSPs)
chr8 (172-276)||(34259763-34259867)
chr8 (173-277)||(33697109-33697214)
chr8 (187-256)||(1979419-1979489)
chr8 (211-272)||(6501486-6501547)
chr8 (199-251)||(8917235-8917287)
chr8 (212-255)||(2723764-2723807)
chr8 (205-234)||(11498542-11498571)
chr8 (219-276)||(11815816-11815873)
chr8 (239-276)||(18646771-18646808)
chr8 (211-256)||(29096953-29096998)
chr8 (215-255)||(10170397-10170437)
[»] chr4 (14 HSPs)
chr4 (183-257)||(19447855-19447929)
chr4 (206-257)||(19262926-19262977)
chr4 (222-280)||(19230327-19230385)
chr4 (204-249)||(30127674-30127719)
chr4 (211-263)||(43061679-43061732)
chr4 (204-252)||(24875735-24875783)
chr4 (212-285)||(27131680-27131754)
chr4 (199-263)||(36768844-36768908)
chr4 (197-256)||(8457932-8457991)
chr4 (200-254)||(3587929-3587983)
chr4 (182-255)||(7367561-7367635)
chr4 (212-276)||(10483470-10483535)
chr4 (211-251)||(683064-683104)
chr4 (205-256)||(6844646-6844695)
[»] chr1 (8 HSPs)
chr1 (204-277)||(43328453-43328526)
chr1 (206-255)||(43609820-43609869)
chr1 (206-253)||(29127664-29127711)
chr1 (222-255)||(17080899-17080932)
chr1 (211-276)||(26462652-26462717)
chr1 (199-255)||(21057791-21057847)
chr1 (211-255)||(37203563-37203607)
chr1 (219-275)||(52097719-52097775)
[»] chr3 (11 HSPs)
chr3 (204-255)||(35990525-35990576)
chr3 (216-276)||(26643290-26643350)
chr3 (204-255)||(9210825-9210876)
chr3 (184-255)||(53791932-53792003)
chr3 (206-256)||(41036770-41036820)
chr3 (216-274)||(51497979-51498037)
chr3 (219-272)||(12929821-12929874)
chr3 (172-256)||(1502581-1502665)
chr3 (204-256)||(8091412-8091464)
chr3 (212-276)||(26656727-26656791)
chr3 (221-253)||(42088735-42088767)
[»] chr7 (5 HSPs)
chr7 (186-253)||(38957324-38957392)
chr7 (211-255)||(9483392-9483436)
chr7 (182-252)||(10893325-10893395)
chr7 (211-252)||(43160495-43160536)
chr7 (199-255)||(4909159-4909215)
[»] chr5 (9 HSPs)
chr5 (172-252)||(27253296-27253376)
chr5 (197-255)||(26207998-26208057)
chr5 (214-255)||(2611090-2611131)
chr5 (212-256)||(39828473-39828517)
chr5 (212-270)||(28322234-28322292)
chr5 (211-257)||(29013013-29013059)
chr5 (214-255)||(16315881-16315922)
chr5 (212-276)||(28452570-28452635)
chr5 (212-257)||(30267531-30267576)
[»] scaffold0205 (1 HSPs)
scaffold0205 (214-256)||(21423-21465)
[»] chr6 (9 HSPs)
chr6 (205-251)||(6916744-6916790)
chr6 (206-256)||(18803254-18803304)
chr6 (212-285)||(2468480-2468554)
chr6 (230-277)||(15443681-15443728)
chr6 (211-262)||(29449682-29449733)
chr6 (212-257)||(13595011-13595057)
chr6 (210-255)||(30781112-30781157)
chr6 (204-276)||(10760842-10760913)
chr6 (169-209)||(20809186-20809226)
[»] scaffold0373 (1 HSPs)
scaffold0373 (205-256)||(1219-1268)
[»] scaffold0024 (1 HSPs)
scaffold0024 (219-255)||(151415-151451)
[»] scaffold0011 (1 HSPs)
scaffold0011 (211-255)||(240028-240072)
[»] scaffold0001 (1 HSPs)
scaffold0001 (172-208)||(398698-398734)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 3103331 - 3103602
Alignment:
Q  13 aaaatatagcttcagctggtatttcaattggattcttggttggttaggtgttgctttcagtttggccttttccattggaggtatttggagtatggtcaat 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3103331 aaaatatagcttcagttggtatttcaattggattcttggttggttaggtgttgctttcagtttggccttttccattggaggtatttggagtatggtcaat 3103430  T
Q  113 gatggactcaagttgaaattcttcaagcccaattaagttttaagtattatgtgctacatcgacactttggattgaaggcgtgtccagtgtccgacattga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3103431 gatggactcaagttgaaattcttcaagcccaattaagttttaagtattatgtgctacatcgacactttggattgaaggcgtgtccagtgtccgacattga 3103530  T
Q  213 cacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgtttgtgctt 284  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3103531 cacatgcggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgtttgtgctt 3103602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 5461159 - 5461221
Alignment:
Q  193 tgtccagtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    ||||||||||| |||||||||| ||||| |||||||||||||  ||||| ||||||||||||||    
T  5461159 tgtccagtgtctgacattgaca-atgtgattacattcaattaatttattatctcaaattattac 5461221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 10090832 - 10090875
Alignment:
Q  192 gtgtccagtgtccgacattgacacatgtggttacattcaattat 235  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||    
T  10090832 gtgtccagtgtccgacattgatacacgtgattacattcaattat 10090875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 18512109 - 18512187
Alignment:
Q  172 cgacactttggattgaaggcgtgtccag-tgtccgacattgacacatgtggttacattcaattatcttattttctcaaa 249  Q
    ||||||||  ||||||||| |||||| | |||  |||| ||||||||||| ||||||| |||||| |||||||||||||    
T  18512109 cgacacttctgattgaaggtgtgtcccggtgtgtgacactgacacatgtgattacattgaattatattattttctcaaa 18512187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 44013934 - 44013876
Alignment:
Q  198 agtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    |||||||| || ||| ||||||| ||||||||||| || ||||||||| ||||||||||    
T  44013934 agtgtccgtcagtgaaacatgtgattacattcaataattttattttctaaaattattac 44013876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 9155998 - 9156039
Alignment:
Q  222 ttacattcaattatcttattttctcaaattattactaatgtc 263  Q
    |||||||||||| ||||||||||| |||||| ||||||||||    
T  9155998 ttacattcaattttcttattttcttaaattactactaatgtc 9156039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 16742939 - 16742875
Alignment:
Q  198 agtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattattactaatgtc 263  Q
    |||||||||||  || |||||||||||| |||||| || | |||||||||||||||||||| ||||    
T  16742939 agtgtccgacaccgatacatgtggttac-ttcaatcatttcattttctcaaattattactagtgtc 16742875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 41508584 - 41508543
Alignment:
Q  215 catgtggttacattcaattatcttattttctcaaattattac 256  Q
    ||||| |||||||||||||||  |||||||||||||||||||    
T  41508584 catgtagttacattcaattattctattttctcaaattattac 41508543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 1527928 - 1527864
Alignment:
Q  212 acacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgt 276  Q
    ||||||||  |||||||||||| | ||||||||||||||||| |  |||||| |||| |||||||    
T  1527928 acacatgttattacattcaattttattattttctcaaattataataaatgtcgacgtatcagtgt 1527864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 18571036 - 18570980
Alignment:
Q  199 gtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    |||| ||||| |||||||| || ||||||| |||||| | |||||||||||||||||    
T  18571036 gtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattatta 18570980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 29931740 - 29931792
Alignment:
Q  205 gacattgacacatgtggttacattcaatta-tcttattttctcaaattattac 256  Q
    |||| ||||||||||| ||||||||| ||| ||| ||||||||||||||||||    
T  29931740 gacactgacacatgtgattacattcagttactctcattttctcaaattattac 29931792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 33498671 - 33498619
Alignment:
Q  220 ggttacattcaattatcttattttctcaaattattactaatgtccacgtgtca 272  Q
    ||||||||||||||||   |||||||||||||||||||  |||| ||||||||    
T  33498671 ggttacattcaattattccattttctcaaattattacttgtgtcgacgtgtca 33498619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 44605146 - 44605190
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||    
T  44605146 gacacatgtaattacattgaattatgttattttctcaaattatta 44605190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 34259763 - 34259867
Alignment:
Q  172 cgacactttggattgaaggcgtgtccagtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtc 271  Q
    |||||||||||||||||||||||||  |||||| |||  ||||| | | |||| |||||||||| | ||||||||||||||||||  ||||| ||||||     
T  34259763 cgacactttggattgaaggcgtgtctggtgtccaacaccgacacgtctagttatattcaattatttcattttctcaaattattaccgatgtctacgtgtt 34259862  T
Q  272 agtgt 276  Q
    |||||    
T  34259863 agtgt 34259867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 33697109 - 33697214
Alignment:
Q  173 gacactttggattgaaggcgtgtccagtgtcc-gacattgacacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtc 271  Q
    |||||||| |||||||||||||||  |||||  ||||  ||||| | |||||| |||||||||| |||||||||||||||||||  |||||| || |||     
T  33697109 gacactttagattgaaggcgtgtcaggtgtcttgacaccgacacgtatggttatattcaattattttattttctcaaattattatcaatgtcgacatgtt 33697208  T
Q  272 agtgtt 277  Q
    ||||||    
T  33697209 agtgtt 33697214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 1979489 - 1979419
Alignment:
Q  187 aaggcgtgtccagtgtccgacattgacac-atgtggttacattcaattatcttattttctcaaattattac 256  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||||| |||||  | ||||||||||||||||||    
T  1979489 aaggcgtgtccggtgtctgacattgacactatgtgattacatttaattaattaattttctcaaattattac 1979419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 6501547 - 6501486
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtca 272  Q
    |||||||||||||||||| |||||| | ||| |||||||||||||| | |||| ||||||||    
T  6501547 gacacatgtggttacatttaattatttcattctctcaaattattaccagtgtcaacgtgtca 6501486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 8917235 - 8917287
Alignment:
Q  199 gtgtccgacattgacacatgtggttacattcaattatcttattttctcaaatt 251  Q
    ||||| ||||| ||||||| || |||||||||||||| |||||||||||||||    
T  8917235 gtgtctgacatggacacatctgattacattcaattatgttattttctcaaatt 8917287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 2723764 - 2723807
Alignment:
Q  212 acacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  2723764 acacatgtgcttacattcaattatgttattttctcaagttatta 2723807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 11498542 - 11498571
Alignment:
Q  205 gacattgacacatgtggttacattcaatta 234  Q
    ||||||||||||||||||||||||||||||    
T  11498542 gacattgacacatgtggttacattcaatta 11498571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 11815873 - 11815816
Alignment:
Q  219 tggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgt 276  Q
    |||||||||||||||||   ||||||||||||||||| |  |||| ||||||||||||    
T  11815873 tggttacattcaattataacattttctcaaattattattggtgtcaacgtgtcagtgt 11815816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 18646808 - 18646771
Alignment:
Q  239 attttctcaaattattactaatgtccacgtgtcagtgt 276  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  18646808 attttctcaaattattactaatgtccaagtgttagtgt 18646771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 29096998 - 29096953
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    |||||||||| |||||||||||||  ||||||||| ||||||||||    
T  29096998 gacacatgtgattacattcaattaatttattttcttaaattattac 29096953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 10170397 - 10170437
Alignment:
Q  215 catgtggttacattcaattatcttattttctcaaattatta 255  Q
    ||||| ||||||||||||||  |||||||||||||||||||    
T  10170397 catgtagttacattcaattaatttattttctcaaattatta 10170437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 19447855 - 19447929
Alignment:
Q  183 attgaaggcgtgtccagtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattattact 257  Q
    ||||| ||||||| | ||||||||||| || |||||||||||||||||||||||  ||||| |||||||||||||    
T  19447855 attgatggcgtgttcggtgtccgacatcgatacatgtggttacattcaattatccaattttatcaaattattact 19447929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 19262926 - 19262977
Alignment:
Q  206 acattgacacatgtggttacattcaattatcttattttctcaaattattact 257  Q
    ||||||||||||||| |||||||||||||| | || ||||||||||||||||    
T  19262926 acattgacacatgtgattacattcaattatgtcatcttctcaaattattact 19262977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 19230327 - 19230385
Alignment:
Q  222 ttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgtttgt 280  Q
    ||||||| |||||| |||||||||||||||||||   ||||||| ||||||||||||||    
T  19230327 ttacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgtttgt 19230385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 30127674 - 30127719
Alignment:
Q  204 cgacattgacacatgtggttacattcaattatcttattttctcaaa 249  Q
    ||||||||||||||||||||||||||||| || | |||||||||||    
T  30127674 cgacattgacacatgtggttacattcaataatttcattttctcaaa 30127719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 43061679 - 43061732
Alignment:
Q  211 gacacatgtggttacattcaattatct-tattttctcaaattattactaatgtc 263  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||| ||||    
T  43061679 gacacatgttgttacattcaattatttatattttctcaaattattactagtgtc 43061732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 24875783 - 24875735
Alignment:
Q  204 cgacattgacacatgtggttacattcaattatcttattttctcaaatta 252  Q
    ||||| ||| ||||||||||||||||||||||  |||||||||||||||    
T  24875783 cgacactgatacatgtggttacattcaattattctattttctcaaatta 24875735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 27131680 - 27131754
Alignment:
Q  212 acacatgtggttacattcaattatctt--attttctcaaattattactaatgtccacgtgtcagtgtttgtgcttt 285  Q
    ||||||||||||||||||||||| |||  ||||||| |||||||||| |||||| ||||| ||||||  |||||||    
T  27131680 acacatgtggttacattcaatta-cttccattttcttaaattattaccaatgtctacgtgccagtgtcggtgcttt 27131754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 36768844 - 36768908
Alignment:
Q  199 gtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattattactaatgtc 263  Q
    ||||| |||| ||||||||||| |||||||||||||  | ||| ||||||||||||||| |||||    
T  36768844 gtgtcggacactgacacatgtgattacattcaattaattaattctctcaaattattactgatgtc 36768908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 8457991 - 8457932
Alignment:
Q  197 cagtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    ||||||| |||||| |  |||||| |||||||||||||| | ||||||||||||||||||    
T  8457991 cagtgtctgacattcatgcatgtgattacattcaattatgtcattttctcaaattattac 8457932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 3587983 - 3587929
Alignment:
Q  200 tgtccgacattgacacatgtggttacattcaattatcttattttctcaaattatt 254  Q
    |||| ||||| ||||||||||||||||||||| ||| | | ||||||||||||||    
T  3587983 tgtctgacatggacacatgtggttacattcaaatatttcactttctcaaattatt 3587929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 7367635 - 7367561
Alignment:
Q  182 gattgaaggcgtgtccagtgtccgacattgacacatgtggttacattcaattatctt-attttctcaaattatta 255  Q
    |||| |||||| ||||  ||| ||||| |||||||||||||||| |||||| | ||| |||||||||||||||||    
T  7367635 gattaaaggcgagtccgatgttcgacactgacacatgtggttacgttcaatcaccttcattttctcaaattatta 7367561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 10483470 - 10483535
Alignment:
Q  212 acacatgtggttacattcaattatcttattttctcaaatt-attactaatgtccacgtgtcagtgt 276  Q
    |||||||||  ||||||||||||  ||||||||||||||| ||||||| |||| |||||| |||||    
T  10483470 acacatgtgaatacattcaattagtttattttctcaaattaattactagtgtcgacgtgttagtgt 10483535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 683104 - 683064
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaatt 251  Q
    |||||||||| |||||||||||||| | |||||||||||||    
T  683104 gacacatgtgattacattcaattatgtcattttctcaaatt 683064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 6844646 - 6844695
Alignment:
Q  205 gacattgacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    ||||| |||||||||| |||||||||||| ||  ||||||||||||||||||    
T  6844646 gacatcgacacatgtgattacattcaattgtc--attttctcaaattattac 6844695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 43328526 - 43328453
Alignment:
Q  204 cgacattgacacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgtt 277  Q
    ||||| ||||||||||||||||||| |||||| | |||||||||||||||||  | |||| |||||||||||||    
T  43328526 cgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgtt 43328453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 43609820 - 43609869
Alignment:
Q  206 acattgacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  43609820 acatggacacatgtgattacattcaattatgttattttctcaaattatta 43609869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 29127711 - 29127664
Alignment:
Q  206 acattgacacatgtggttacattcaattatcttattttctcaaattat 253  Q
    |||||||||||| || ||||||||||||| || |||||||||||||||    
T  29127711 acattgacacatttgattacattcaattaactcattttctcaaattat 29127664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 17080899 - 17080932
Alignment:
Q  222 ttacattcaattatcttattttctcaaattatta 255  Q
    |||||||||||||| |||||||||||||||||||    
T  17080899 ttacattcaattatgttattttctcaaattatta 17080932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 26462652 - 26462717
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgt 276  Q
    |||||||||| |||||||||||||| | ||||||| |||||||||  | |||| ||||||| ||||    
T  26462652 gacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtcggtgt 26462717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 21057847 - 21057791
Alignment:
Q  199 gtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    |||| ||||| | ||||||| | |||||||||||||| ||||||||| |||||||||    
T  21057847 gtgttcgacactaacacatgcgattacattcaattatgttattttctaaaattatta 21057791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 37203607 - 37203563
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    |||||||||| |||||||||||||| ||| ||| |||||||||||    
T  37203607 gacacatgtgattacattcaattattttactttttcaaattatta 37203563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 52097775 - 52097719
Alignment:
Q  219 tggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtg 275  Q
    |||||||||| |||||| |||||||||||| ||||||  |||||| |||| ||||||    
T  52097775 tggttacatttaattattttattttctcaatttattataaatgtcaacgtatcagtg 52097719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 35990525 - 35990576
Alignment:
Q  204 cgacattgacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||||||||    
T  35990525 cgacactgacacatgtggttacattcagttattttattttctcaaattatta 35990576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 26643290 - 26643350
Alignment:
Q  216 atgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgt 276  Q
    ||||||||||||||||||||  |||||||| |||||||||| | | || ||||||||||||    
T  26643290 atgtggttacattcaattattctattttcttaaattattaccagtatcgacgtgtcagtgt 26643350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 9210825 - 9210876
Alignment:
Q  204 cgacattgacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    ||||||||||||||||| || |||| |||||| | |||||||||||||||||    
T  9210825 cgacattgacacatgtgattccattgaattatgtcattttctcaaattatta 9210876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 53791932 - 53792003
Alignment:
Q  184 ttgaaggcgtgtccagtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    ||||||| |||||| || || ||||  |||||||||||||||||||||||||    ||||||||||||||||    
T  53791932 ttgaaggtgtgtccggtctctgacaccgacacatgtggttacattcaattattcctttttctcaaattatta 53792003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 41036770 - 41036820
Alignment:
Q  206 acattgacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    |||| ||||| ||||||||||||||| ||| | ||||||||||||||||||    
T  41036770 acatcgacacgtgtggttacattcaactatatcattttctcaaattattac 41036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 51498037 - 51497979
Alignment:
Q  216 atgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagt 274  Q
    |||| |||||||||||||||  |||||| |||||||||||||| |||  ||||||||||    
T  51498037 atgtagttacattcaattattctattttatcaaattattactagtgtggacgtgtcagt 51497979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 12929821 - 12929874
Alignment:
Q  219 tggttacattcaattatcttattttctcaaattattactaatgtccacgtgtca 272  Q
    |||||||||||| |||| |||||||||||||||||| |  |||| |||||||||    
T  12929821 tggttacattcatttattttattttctcaaattattgccgatgttcacgtgtca 12929874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 1502665 - 1502581
Alignment:
Q  172 cgacactttggattgaaggcgtgtccagtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    ||||||||  ||| |||| ||||| | |||||| |||  |||||||||| |||||||||||||| | ||||||| | ||||||||    
T  1502665 cgacacttctgatagaagacgtgttctgtgtccaacacagacacatgtgattacattcaattatgtcattttcttagattattac 1502581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 8091412 - 8091464
Alignment:
Q  204 cgacattgacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    |||||| |||||||||  ||||||||||| ||| |||||||| ||||||||||    
T  8091412 cgacatcgacacatgtaattacattcaataatcctattttcttaaattattac 8091464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 26656727 - 26656791
Alignment:
Q  212 acacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgt 276  Q
    ||||||||||||||||| |||||| |||||||  ||||||| ||||  |||| |||||| |||||    
T  26656727 acacatgtggttacattgaattattttatttttccaaattactactgttgtcaacgtgttagtgt 26656791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 42088767 - 42088735
Alignment:
Q  221 gttacattcaattatcttattttctcaaattat 253  Q
    ||||||||||||||| |||||||||||||||||    
T  42088767 gttacattcaattattttattttctcaaattat 42088735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 38957324 - 38957392
Alignment:
Q  186 gaaggcgtgtccagtgtccgacattgacacatgtggttacattcaattatctta-ttttctcaaattat 253  Q
    ||||||||||| ||||| ||||| ||||||||||| |||||||||||||  ||| ||||||||||||||    
T  38957324 gaaggcgtgtctagtgtacgacactgacacatgtgattacattcaattaatttatttttctcaaattat 38957392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 9483436 - 9483392
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||    
T  9483436 gacacatatggttacattcaattattctattttctcaaattatta 9483392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 10893325 - 10893395
Alignment:
Q  182 gattgaaggcgtgtccagtgtccgacattgacacatgtggttacattcaattatcttattttctcaaatta 252  Q
    |||||||||||||||  |||||||| |   ||||||| | |||||||||||||| | ||||||||||||||    
T  10893325 gattgaaggcgtgtctggtgtccgataccaacacatgcgattacattcaattatgtcattttctcaaatta 10893395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 43160536 - 43160495
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaatta 252  Q
    |||||||||| |||||||||||||| ||||||||| ||||||    
T  43160536 gacacatgtgattacattcaattatgttattttcttaaatta 43160495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 4909215 - 4909159
Alignment:
Q  199 gtgtccgacattgacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    |||||||||| |||||||| || ||||| | |||||| | |||||||||||||||||    
T  4909215 gtgtccgacactgacacatatgattacaatgaattatgtaattttctcaaattatta 4909159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 27253376 - 27253296
Alignment:
Q  172 cgacactttggattgaaggcgtgtccagtgtccgacattgacacatgtggttacattcaattatcttattttctcaaatta 252  Q
    ||||||||| |||||||| ||| || |||||| |||| ||||||||||| ||||||||||||||   ||||| ||||||||    
T  27253376 cgacacttttgattgaagccgtatctagtgtcagacactgacacatgtgattacattcaattatgacattttttcaaatta 27253296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 26207998 - 26208057
Alignment:
Q  197 cagtgtccgacattgacacatgtggttacattcaatta-tcttattttctcaaattatta 255  Q
    |||||||||||| ||||||||||||||||||||||  | | |||||||||||||||||||    
T  26207998 cagtgtccgacactgacacatgtggttacattcaaacacttttattttctcaaattatta 26208057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 2611090 - 2611131
Alignment:
Q  214 acatgtggttacattcaattatcttattttctcaaattatta 255  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  2611090 acatgtggttacattcaataattttattttctcaaattatta 2611131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 39828517 - 39828473
Alignment:
Q  212 acacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    |||||||||||||||||||||||| | || |||||||||||||||    
T  39828517 acacatgtggttacattcaattatttcatattctcaaattattac 39828473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 28322292 - 28322234
Alignment:
Q  212 acacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgt 270  Q
    ||||||||| |||||||||||||  | ||||||||||||||| |||| |||| ||||||    
T  28322292 acacatgtgattacattcaattaattcattttctcaaattatcactagtgtcgacgtgt 28322234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 29013013 - 29013059
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaattattact 257  Q
    ||||||||| |||||| |||||||| ||||||||||||| |||||||    
T  29013013 gacacatgtcgttacactcaattattttattttctcaaactattact 29013059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 16315922 - 16315881
Alignment:
Q  214 acatgtggttacattcaattatcttattttctcaaattatta 255  Q
    |||||||||||||||||||||| | |||| ||||||||||||    
T  16315922 acatgtggttacattcaattatatcatttcctcaaattatta 16315881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 28452635 - 28452570
Alignment:
Q  212 acacatgtggttacattcaattatcttattttctcaaattattactaatgtccac-gtgtcagtgt 276  Q
    ||||||||||| |||||||||||| ||||||||| ||| || ||| |||||| || ||||||||||    
T  28452635 acacatgtggtaacattcaattattttattttctaaaaatactaccaatgtcgacggtgtcagtgt 28452570  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 30267531 - 30267576
Alignment:
Q  212 acacatgtggttacattcaattatcttattttctcaaattattact 257  Q
    |||| |||| ||||||| |||||| |||||||||||||||||||||    
T  30267531 acacttgtgattacatttaattatattattttctcaaattattact 30267576  T

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Target: scaffold0205 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 21465 - 21423
Alignment:
Q  214 acatgtggttacattcaattatcttattttctcaaattattac 256  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  21465 acatgtggttacattcaattattttattttctcaaactattac 21423  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 6916790 - 6916744
Alignment:
Q  205 gacattgacacatgtggttacattcaattatcttattttctcaaatt 251  Q
    |||||||||||||||||||||||||||||||   |||||||||||||    
T  6916790 gacattgacacatgtggttacattcaattattcaattttctcaaatt 6916744  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 18803304 - 18803254
Alignment:
Q  206 acattgacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    ||||||||||||||| |||||||||||||| | |||||||||||| |||||    
T  18803304 acattgacacatgtgattacattcaattatgtaattttctcaaataattac 18803254  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 2468480 - 2468554
Alignment:
Q  212 acacatgtggttacattcaattatctt--attttctcaaattattactaatgtccacgtgtcagtgtttgtgcttt 285  Q
    ||||||||||||||||||||||| |||  ||||||| |||||||||| |||||| ||||| ||||||  |||||||    
T  2468480 acacatgtggttacattcaatta-cttccattttcttaaattattaccaatgtctacgtgccagtgtcggtgcttt 2468554  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 15443728 - 15443681
Alignment:
Q  230 aattatcttattttctcaaattattactaatgtccacgtgtcagtgtt 277  Q
    |||||| ||||||||||||||||||| | ||||| |||||||||||||    
T  15443728 aattatgttattttctcaaattattattgatgtcgacgtgtcagtgtt 15443681  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 29449733 - 29449682
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaattattactaatgt 262  Q
    |||||||||| |||||||||||||| ||||||||| |||||| ||| |||||    
T  29449733 gacacatgtgattacattcaattatgttattttctgaaattactaccaatgt 29449682  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 13595011 - 13595057
Alignment:
Q  212 acacatgtggttacattcaatt-atcttattttctcaaattattact 257  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||||    
T  13595011 acacatgtggtcacattcaattgatcttattttctcaaaatattact 13595057  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 30781112 - 30781157
Alignment:
Q  210 tgacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    ||||||||| | |||||||||||||| |||||||||||| ||||||    
T  30781112 tgacacatgcgattacattcaattatgttattttctcaagttatta 30781157  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 10760842 - 10760913
Alignment:
Q  204 cgacattgacacatgtggttacattcaattatcttattttctcaaattattactaatgtccacgtgtcagtgt 276  Q
    |||||| ||||| |||| ||||||||||| || | |||||||||||||||||  | |||| ||||||||||||    
T  10760842 cgacatcgacacgtgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgacgtgtcagtgt 10760913  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 20809186 - 20809226
Alignment:
Q  169 catcgacactttggattgaaggcgtgtccagtgtccgacat 209  Q
    |||||||||||||||| |||||| ||||| |||||||||||    
T  20809186 catcgacactttggatcgaaggcatgtccggtgtccgacat 20809226  T

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Target: scaffold0373 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 1219 - 1268
Alignment:
Q  205 gacattgacacatgtggttacattcaattatcttattttctcaaattattac 256  Q
    ||||| |||||||||| |||||||||||| ||  ||||||||||||||||||    
T  1219 gacatcgacacatgtgattacattcaattgtc--attttctcaaattattac 1268  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 151415 - 151451
Alignment:
Q  219 tggttacattcaattatcttattttctcaaattatta 255  Q
    |||||||||| |||||| |||||||||||||||||||    
T  151415 tggttacatttaattattttattttctcaaattatta 151451  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 240028 - 240072
Alignment:
Q  211 gacacatgtggttacattcaattatcttattttctcaaattatta 255  Q
    ||||||| || ||||||| |||||| |||||||||||||||||||    
T  240028 gacacatatgattacattgaattatattattttctcaaattatta 240072  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 398734 - 398698
Alignment:
Q  172 cgacactttggattgaaggcgtgtccagtgtccgaca 208  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  398734 cgacactttggattaaaggcatgtccagtgtccgaca 398698  T

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