View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16003_high_14 (Length: 436)

Name: NF16003_high_14
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16003_high_14
NF16003_high_14
[»] chr1 (12 HSPs)
chr1 (2-436)||(936026-936460)
chr1 (176-432)||(949106-949365)
chr1 (180-432)||(960082-960337)
chr1 (176-432)||(971399-971646)
chr1 (176-432)||(942129-942376)
chr1 (149-321)||(420010-420179)
chr1 (203-399)||(924013-924206)
chr1 (137-272)||(974970-975105)
chr1 (203-436)||(901764-901996)
chr1 (299-436)||(909573-909710)
chr1 (278-370)||(916034-916126)
chr1 (1-101)||(935962-936059)
[»] scaffold0312 (1 HSPs)
scaffold0312 (149-321)||(10392-10561)


Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 2 - 436
Target Start/End: Original strand, 936026 - 936460
Alignment:
Q  2 aaaggtggagttcatgtaaatgcaggtaaaggaaaaccaggtggtggaacagcagttaatgttggcaaaggtggtgtaaatgttcatgcaggaaaaggaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  936026 aaaggtggagttcatgtaaatgcaggtaaaggaaaaccaggtggtggaacaagagttaatgttggcaaaggtggtgtaaatgttcatgcaggaaaaggaa 936125  T
Q  102 gaggaaaaccagtacatgtttcagttggaaacaaatctccatttttgtacaattatgctgcaagtgaaacacagttacatgataaaccaactgtagcact 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  936126 gaggaaaaccagtacatgtttcagttggaaacaaatctccatttttgtacaattatgctgcaagtgaaacacagttacatgataaaccaaatgtagcact 936225  T
Q  202 tttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagtt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  936226 tttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagtt 936325  T
Q  302 gctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaacagaagaatatgaaattgtgaagaacacaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  936326 gctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaacagaagaatctgaaattgtgaagaacacaa 936425  T
Q  402 taagtgagtgtgaagaaaatggcatcaaaggagag 436  Q
    |||||||||||||||||||||||||||||||||||    
T  936426 taagtgagtgtgaagaaaatggcatcaaaggagag 936460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 176 - 432
Target Start/End: Original strand, 949106 - 949365
Alignment:
Q  176 ttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatg 275  Q
    ||||||||||||| || |||| |||||||||||||  |||| ||||||||||| |||||||| |||||||||||||||  | | || | ||||||| ||     
T  949106 ttacatgataaacaaaatgtaacacttttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattccaagagacaacttcaaataata 949205  T
Q  276 atg---caaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaac 372  Q
    |||   ||||||||||||||| ||||||||||||||| ||||| ||||| |||| |||| | |||||||| || |||  ||| ||||||||||||||| |    
T  949206 atggaacaaaattcttgcctagagaagttgctaattccatacccttttcatcaaacaaattggaaaacatactcaacaagttttccatcaaggaaggatc 949305  T
Q  373 agaagaatatgaaattgtgaagaacacaataagtgagtgtgaagaaaatggcatcaaagg 432  Q
    | | |||  ||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  949306 aaaggaagctgaaattgtgaagagaacaataagtgagtgtgaagcaaatggcatcaaagg 949365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 432
Target Start/End: Original strand, 960082 - 960337
Alignment:
Q  180 atgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatg- 278  Q
    ||||||||| || |||| |||||||||||||  |||| ||||||||||| |||||||| |||||||||||||||| | | || | ||||||| || |||     
T  960082 atgataaacaaaatgtaacacttttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattcaaagagacaacttcaaataataatgg 960181  T
Q  279 --caaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaacagaa 376  Q
      ||||||||||||||| ||||||||||||||| ||||| ||||| |||| |||| | |||||||| || |||  ||| ||||||||||||||| || |     
T  960182 aacaaaattcttgcctagagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaag 960281  T
Q  377 gaatatgaaattgtgaagaacacaataagtgagtgtgaagaaaatggcatcaaagg 432  Q
    |||  ||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  960282 gaagctgaaattgtgaagagaacaataagtgagtgtgaagcaaatggcatcaaagg 960337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 176 - 432
Target Start/End: Original strand, 971399 - 971646
Alignment:
Q  176 ttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatg 275  Q
    ||||||||||||| || |||| |||||||||||||  |||| ||||||||||| |||||||| |||||||||||||||||||| |         ||  ||    
T  971399 ttacatgataaacaaaatgtaacacttttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattcacaaata---------atagtg 971489  T
Q  276 atgcaaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaacaga 375  Q
      |||||||||||||||||||||||||||||||| ||||| ||||| |||| |||| | |||||||| || |||  ||| ||||||||||||||| || |    
T  971490 gagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaa 971589  T
Q  376 agaatatgaaattgtgaagaacacaataagtgagtgtgaagaaaatggcatcaaagg 432  Q
     |||  ||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  971590 ggaagctgaaattgtgaagagaacaataagtgagtgtgaagcaaatggcatcaaagg 971646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 176 - 432
Target Start/End: Original strand, 942129 - 942376
Alignment:
Q  176 ttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatg 275  Q
    ||||||||||||| || |||  |||||||||||||  |||| ||||||||||| |||||||| |||||||||||||||||||| |         ||  ||    
T  942129 ttacatgataaacaaaatgtcacacttttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattcacaaata---------atagtg 942219  T
Q  276 atgcaaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaacaga 375  Q
      |||||||||||||||||||||||||||||||| ||||| ||||| |||| |||| | |||||||| || |||  ||| ||||||||||||||| || |    
T  942220 gagcaaaattcttgcctaaagaagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaa 942319  T
Q  376 agaatatgaaattgtgaagaacacaataagtgagtgtgaagaaaatggcatcaaagg 432  Q
     |||  ||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  942320 ggaagctgaaattgtgaagagaacaataagtgagtgtgaagcaaatggcatcaaagg 942376  T

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Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 149 - 321
Target Start/End: Complemental strand, 420179 - 420010
Alignment:
Q  149 tacaattatgctgcaagtgaaacacagttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgc 248  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||| || |||||||| |||||||| ||||||||  |||||||||    
T  420179 tacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcactcttctttttggaaaaggacttgcatcatggaacaaaactgaacttgc 420080  T
Q  249 aattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagttgctaattcaatacctttttc 321  Q
    ||||||| || |||| |||||   |||  |||| |||||||||     |||||||||||||||||||||||||    
T  420079 aattcactaagaccacttcaa---atgcggcaacattcttgccgcgccaagttgctaattcaatacctttttc 420010  T

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Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 399
Target Start/End: Original strand, 924013 - 924206
Alignment:
Q  203 ttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagttg 302  Q
    |||||||| |||||||| |||||| | || ||||| |||||| ||||||||||||| |||   ||| || |||  |||| ||||||||||   |||||||    
T  924013 ttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaattcacaaagacc---tcagattatggagcaacattcttgcctcgtgaagttg 924109  T
Q  303 ctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaacagaagaatatgaaattgtgaagaacac 399  Q
    ||||||| ||||| ||||| |||| |||||| ||||||||||||||||  |||||||||||| ||||| | |  ||||||||||||||||| |||||    
T  924110 ctaattccataccattttcatcaaacaaagtggaaaacatccttaactacttctccatcaagcaaggatcggcggaatatgaaattgtgaaaaacac 924206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 974970 - 975105
Alignment:
Q  137 tctccatttttgtacaattatgctgcaagtgaaacacagttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaa 236  Q
    ||||||||| | || ||||||||||||||||| || || |||||||||||||||| ||||||||| |||||  | ||||||||  ||||||| |||||||    
T  974970 tctccatttatttataattatgctgcaagtgagactcaattacatgataaaccaaatgtagcactcttctttctggaaaaggacctgcatcatggaacaa 975069  T
Q  237 agttgaacttgcaattcacaaaaaccaattcaaatg 272  Q
    |  |||||||||||||| | || |||| ||||||||    
T  975070 aactgaacttgcaattctctaagaccacttcaaatg 975105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 436
Target Start/End: Original strand, 901764 - 901996
Alignment:
Q  203 ttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagttg 302  Q
    |||||||| ||||| || |||||||  || ||||| |||||| ||||||||| ||| |||   |||||| |||| | || ||| ||||||   |||||||    
T  901764 ttcttcttggaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacc---tcaaattatgaagtaacatttttgcctcgtgaagttg 901860  T
Q  303 ctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaacagaagaatatgaaattgtgaagaacacaat 402  Q
    ||||||| || || ||||| |||| |||||| ||||| |||||||||   || ||||||||| ||||| || |||| | | ||||||||||||| || ||    
T  901861 ctaattccattcccttttcatcaaacaaagtggaaaaaatccttaaccacttttccatcaagcaaggatcaaaagagtctaaaattgtgaagaataccat 901960  T
Q  403 --aagtgagtgtgaagaaaatggcatcaaaggagag 436  Q
       ||||||||||||||||||| |||||||||||||    
T  901961 tatagtgagtgtgaagaaaatgacatcaaaggagag 901996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 299 - 436
Target Start/End: Original strand, 909573 - 909710
Alignment:
Q  299 gttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaaggaacagaagaatatgaaattgtgaagaaca 398  Q
    ||||| ||||| || || ||||| |||| |||| | ||||||||||||||||  |||||||||||| ||||| |    |||| |||||||||||||||||    
T  909573 gttgcgaattccattcccttttcatcaaacaaattggaaaacatccttaactacttctccatcaagcaaggatcgacggaatctgaaattgtgaagaaca 909672  T
Q  399 caataagtgagtgtgaagaaaatggcatcaaaggagag 436  Q
    |||||||||| ||||||| | |||| ||||||||||||    
T  909673 caataagtgaatgtgaagcatatggtatcaaaggagag 909710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 370
Target Start/End: Original strand, 916034 - 916126
Alignment:
Q  278 gcaaaattcttgcctaaagaagttgctaattcaatacctttttcttcaagcaaagttgaaaacatccttaacttgttctccatcaaggaagga 370  Q
    |||| ||||||||||   ||||| |||||||| ||||| ||||| |||| |||||| |||||||||||||| |  |||||||||||| |||||    
T  916034 gcaacattcttgcctcgtgaagtcgctaattccataccattttcatcaaacaaagtggaaaacatccttaattacttctccatcaagcaagga 916126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 935962 - 936059
Alignment:
Q  1 aaaaggtggagttcatgtaaatgcaggtaaaggaaaaccaggtggtggaacagcagttaatgttggcaaaggtggtgtaaatgttcatgcaggaaaagga 100  Q
    |||||||||||| |||||  ||||||| |||  ||| |||||||   |||||||||| ||||||||||||||||| ||  ||||  ||||||| ||||||    
T  935962 aaaaggtggagtccatgttgatgcaggaaaaacaaagccaggtg---gaacagcagtcaatgttggcaaaggtggagttcatgtaaatgcaggtaaagga 936058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 149 - 321
Target Start/End: Original strand, 10392 - 10561
Alignment:
Q  149 tacaattatgctgcaagtgaaacacagttacatgataaaccaactgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgc 248  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||| || |||||||| |||||||| ||||||||  |||||||||    
T  10392 tacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcactcttctttttggaaaaggacttgcatcatggaacaaaactgaacttgc 10491  T
Q  249 aattcacaaaaaccaattcaaatgatgatgcaaaattcttgcctaaagaagttgctaattcaatacctttttc 321  Q
    ||||||| || |||| |||||   |||  |||| |||||||||     |||||||||||||||||||||||||    
T  10492 aattcactaagaccacttcaa---atgcggcaacattcttgccgcgccaagttgctaattcaatacctttttc 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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