View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_17 (Length: 412)
Name: NF16003_high_17
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 45106839 - 45107217
Alignment:
| Q |
15 |
tgaaaccatgattatgaatataaccacacaatatattttcggacggatatcctgcattcaaaagtatatttgatcaagaacagaaaattaaaaataaaag |
114 |
Q |
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| T |
45106839 |
tgaaaccatgattatgaatataaccacacaatatattttcggacggatatcctgcattcataagtatatttgatcaagaacagaaaatttaaaataaaag |
45106938 |
T |
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| Q |
115 |
catactcaatttctacggttaattcaattttttccctagaaaatgtgtgtgatgaaggggagagattttagtacttacatttctatccaatgcggtagag |
214 |
Q |
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| T |
45106939 |
catactcaatttctacggttaattcaattttttccctagaaaatgtgtgtgatgaaggggagagattttagtacatacatttctatccaatgcggtagag |
45107038 |
T |
|
| Q |
215 |
tacatgtttacttccacaacacctttgcagttcaaaagtagggcaagggagataccatcctttaaaggcatgttgaaaatgagtgaagatagaaagcatg |
314 |
Q |
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| T |
45107039 |
tacatgtttacttccacaacacctttgcagttcaaaagtagggcaagggagataccatcctttaaaggcatgttgaaaatgagtgaagatagaaagcatg |
45107138 |
T |
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| Q |
315 |
ctaccatttttaaaaaataacccgtaaataaaacaaacagagaagtctcaagtgttgatcctgaatatgatgatctcca |
393 |
Q |
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| T |
45107139 |
ctaccatttttaaaaaataaccagtaaataaaacaaacaaagaagtctcaagtgttgatcctgaatatgatgatctcca |
45107217 |
T |
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