View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_19 (Length: 396)
Name: NF16003_high_19
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 4292392 - 4292740
Alignment:
| Q |
16 |
caaaatgcatgttaagctgtgatgaatcaacttgagtagtgggatcgaaaataattagagatgtttgcgaatcggtttggtttgattttaaataaacttg |
115 |
Q |
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| T |
4292392 |
caaaatgcatgttaagctgtgatgaatcaacttgagtagtgggatcgaaaataattagggatgtttgcgaatcggtttggtttgattttaaataaacttg |
4292491 |
T |
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| Q |
116 |
atgtcctggtcgatcaaacaaacatatacagattgagttgagttggatttgtatattttgagataaaattcaaaacgaacagataaacaacaaattgaat |
215 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4292492 |
atgtcctggtcgatcaaa----catatacagattgagttgagttggatttgtatattttgagataaaattcaaaacgaacagataaacaacaaattgaat |
4292587 |
T |
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| Q |
216 |
tggaccggattgattgggtaatcctactctatactctgtgtgatctnnnnnnnttctcaaatatttaggggctttgtaaaaaacagaagtgtaaggacct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4292588 |
tggaccggattgattgggtaatcctactctatactctgtgtgatctaaaaaaattctcaaatatttaggggctttgtaaaaaacagaagtgtaaggacct |
4292687 |
T |
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| Q |
316 |
catagttttagtgattaacacaccataaacgtgacgaaatggaggatcatatc |
368 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4292688 |
cataattttagtgattaacacaccataaacgtgacgaaatggaggatcatatc |
4292740 |
T |
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